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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zmw_sc04464.1.g00040.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 184aa MW: 19133.3 Da PI: 7.7209 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zmw_sc04464.1.g00040.1 | genome | ZGD | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.8 | 6.8e-12 | 22 | 47 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C ++ +tGtCk+G++Ck++H++
Zmw_sc04464.1.g00040.1.sm.mkhc 22 GQPVCEYYVKTGTCKFGSNCKYHHPK 47
5799********************96 PP
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| 2 | zf-CCCH | 34.8 | 2.7e-11 | 69 | 92 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+C ++a++G+CkyG Ck+ H++
Zmw_sc04464.1.g00040.1.sm.mkhc 69 QPCAYYAQNGYCKYGVACKYDHPM 92
69********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 15.957 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.9E-6 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-7 | 21 | 49 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-9 | 22 | 47 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.0E-6 | 25 | 49 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-6 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.864 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-6 | 68 | 94 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 69 | 90 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.4E-9 | 69 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
MALPFGGGAK NGAASNFPER MGQPVCEYYV KTGTCKFGSN CKYHHPKQDG SVQSVQLNNS 60
GFPLRPGAQP CAYYAQNGYC KYGVACKYDH PMGTLGCSSS ALPLSDTYPI GFPVAALTPS 120
SSSPDLRPDY ISTKDQSVNQ VASAAAAPEP VGAILPKEGY SPDNIMRAQT STTGGDSSSP 180
GGGY
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| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Friedrichs G,Fikri M,Guo Y,Temps F
Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
J Phys Chem A, 2008. 112(25): p. 5636-46
[PMID:18512897] - Ning H,Gong C,Li Z,Li X
Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
J Phys Chem A, 2015. 119(18): p. 4093-107
[PMID:25868004]
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