PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04414.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 829aa MW: 90942.7 Da PI: 10.8038

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04414.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	212.8	1.8e-65	234	517	105	373
GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181 aveg vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ + ++ ++ e+g +L +fA++ +++++f+v+ Zmw_sc04414.1.g00060.1.am.mk 234 AVEGFPVVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGSYApppaLDMSYDELGAKLVNFARSRNLSMDFRVV 314 789999**********************************99877777777778899****************** PP GRAS 182 .......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhn 249 +++ +++l++++L + Eal+Vn+++ lh+++de++ + s r+ +Lk +++l P +vvvve++ad + Zmw_sc04414.1.g00060.1.am.mk 315 ptspadaLTSLVDQLRVQQLVSDGTEALVVNCHMLLHTVPDETAGSVSlaqpvsLRTMLLKSIRTLDPALVVVVEEDADFT 395 887666555566677777777777************998777666657777999******************* PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 +++ + r+ a+++++ +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e ++W +r+++aGF+pv+++ Zmw_sc04414.1.g00060.1.am.mk 396 AGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRNAGFRPVAFN 475 ***********************************.************************************* PP GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e+aa ++k++l++++ g+ ++ e++ +vl+Wk++++v++SaW Zmw_sc04414.1.g00060.1.am.mk 476 EEAAGEVKAMLNEHA-AGWGMKREDDDIVLTWKGHNVVFASAW 517 ***********.8899999****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.121	234	499	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-63	234	517	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence Send to blast
MLAKRGSGFI DRTIGEHANT KPSRGSFWLL RSTYAPAVVA AYVAYSHEVV VHGAVYDLAS 60 TKHERIDLLS KLMASHSNPM HTCMHAAAVP PCQSRGSACR TLVAQAPCPC RRRTDSPAAG 120 PRRVLCSLET FNARVRAPRT RPGSGRASSA NRDRNEPSFA APTSRRAGAR TTVTSFMAEP 180 GPRAVLCCRL PSGCVRALTR SGVPLAGRSR KLQTPVQADR QVPTDGWPAD WGPAVEGFPV 240 VHIVDLSTTH CMQIPTLIDM LASRAEGPPI LRLTVADVGS YAPPPALDMS YDELGAKLVN 300 FARSRNLSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGTE ALVVNCHMLL HTVPDETAGS 360 VSLAQPVSLR TMLLKSIRTL DPALVVVVEE DADFTAGDVV GRLRAAFNFM WIPYDAVDTF 420 LPKGSEQRRW YEAEVGWKVE NVLAQEGVER VERQEDRARW GQRMRNAGFR PVAFNEEAAG 480 EVKAMLNEHA AGWGMKREDD DIVLTWKGHN VVFASAWAPF WAIGFQAWAD EKRAHEIHYA 540 DHTRWARTAR CGGRLAGSQA KRAAHIGLVW LPQCFLRRPH LRCHGHTRMS RNRRMGTGTL 600 PPCSSRHLRL SCSAKRGRRT RRGPGSNATN HRCLPAMRLI WASTFSRSLD LASERPGQRL 660 RHFQALAEKI ESGRRRVHPS RFTYSLHRRQ KGQPHRSAGL TTASTVSDTA RLPPGERGQR 720 RRMDVAVTER IMRPAAVAVA TARTLKFSGE AMEAHASARR EFYSAARVAV PVSIWDATGR 780 VCFVEGGAVL GAHACRVGKE PGAPATSAAP SFPQTSVSGS TDHGIKSWD

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence Send to blast

MLAKRGSGFI DRTIGEHANT KPSRGSFWLL RSTYAPAVVA AYVAYSHEVV VHGAVYDLAS  60
TKHERIDLLS KLMASHSNPM HTCMHAAAVP PCQSRGSACR TLVAQAPCPC RRRTDSPAAG  120
PRRVLCSLET FNARVRAPRT RPGSGRASSA NRDRNEPSFA APTSRRAGAR TTVTSFMAEP  180
GPRAVLCCRL PSGCVRALTR SGVPLAGRSR KLQTPVQADR QVPTDGWPAD WGPAVEGFPV  240
VHIVDLSTTH CMQIPTLIDM LASRAEGPPI LRLTVADVGS YAPPPALDMS YDELGAKLVN  300
FARSRNLSMD FRVVPTSPAD ALTSLVDQLR VQQLVSDGTE ALVVNCHMLL HTVPDETAGS  360
VSLAQPVSLR TMLLKSIRTL DPALVVVVEE DADFTAGDVV GRLRAAFNFM WIPYDAVDTF  420
LPKGSEQRRW YEAEVGWKVE NVLAQEGVER VERQEDRARW GQRMRNAGFR PVAFNEEAAG  480
EVKAMLNEHA AGWGMKREDD DIVLTWKGHN VVFASAWAPF WAIGFQAWAD EKRAHEIHYA  540
DHTRWARTAR CGGRLAGSQA KRAAHIGLVW LPQCFLRRPH LRCHGHTRMS RNRRMGTGTL  600
PPCSSRHLRL SCSAKRGRRT RRGPGSNATN HRCLPAMRLI WASTFSRSLD LASERPGQRL  660
RHFQALAEKI ESGRRRVHPS RFTYSLHRRQ KGQPHRSAGL TTASTVSDTA RLPPGERGQR  720
RRMDVAVTER IMRPAAVAVA TARTLKFSGE AMEAHASARR EFYSAARVAV PVSIWDATGR  780
VCFVEGGAVL GAHACRVGKE PGAPATSAAP SFPQTSVSGS TDHGIKSWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	4e-29	234	519	139	420	Protein SHORT-ROOT
5b3h_E	4e-29	234	519	139	420	Protein SHORT-ROOT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5697	37	59