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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04405.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 151aa MW: 16482.4 Da PI: 7.4642 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 45.5 | 2.1e-14 | 5 | 34 | 49 | 78 |
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh+lsefD++krsCrrrL++hn+rrrk+q+ Zmw_sc04405.1.g00070.1.am.mkhc 5 FHALSEFDQKKRSCRRRLSDHNARRRKQQP 34 ***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.4 | 1 | 32 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.75E-11 | 4 | 37 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 0.001 | 5 | 19 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-7 | 5 | 32 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MLCWFHALSE FDQKKRSCRR RLSDHNARRR KQQPDAFAFA SARLPTSLFG PDTSVTTSKF 60 DGAPDLQRAL SLLSAGSCGF PDPVQQASCL IQFSGTSENS GDLHLSHGGS AALVSCADEQ 120 HIVPQPQLVR FTMDASSNGY DSTFFGLNQI N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 30 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688371.1 | 5e-56 | PREDICTED: squamosa promoter-binding-like protein 4 isoform X2 | ||||
Refseq | XP_025805124.1 | 2e-55 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 4e-18 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A2T7F2J9 | 4e-55 | A0A2T7F2J9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QEF9 | 4e-55 | A0A3L6QEF9_PANMI; Squamosa promoter-binding-like protein 4 | ||||
STRING | Pavir.Ab00499.1.p | 6e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |