PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04364.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 275aa    MW: 29228.7 Da    PI: 7.8521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04364.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-06105128123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C++Cg+sF ++  L  Hi+  H
  Zmw_sc04364.1.g00050.1.sm.mk 105 YVCTICGRSFATPQALGGHISAgH 128
                                   9***************99998777 PP
2zf-C2H214.20.00013144166123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zmw_sc04364.1.g00050.1.sm.mk 144 HKCPVCGEVFPSGMALGGHMGKH 166
                                   79**************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.107.7E-591155IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576678.93E-6103166No hitNo description
PfamPF139123.8E-6104123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93105133IPR007087Zinc finger, C2H2
SMARTSM003550.052105128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107128IPR007087Zinc finger, C2H2
PfamPF139124.0E-9144168IPR007087Zinc finger, C2H2
SMARTSM003550.011144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642144171IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAPPSPRSSP TPATSDRDSR TISDACCSAV GAVDAATSVP EPRRRPLVRP TPVVFAESNP  60
SPASCVDPPS EPKPSNEVFV HEQQPREVDD HEHQPAQDPD PPKRYVCTIC GRSFATPQAL  120
GGHISAGHNY RQRKAADPAD RKEHKCPVCG EVFPSGMALG GHMGKHRDRP QTAGKKSKKQ  180
RVEPPPAAPV APLAPLASAA AAGTMAEVTL PQENQAGQPS HSPPEVNGTR LFGVYMSPNV  240
NIIRLFGVYM SPHVLIEAPA EQNPDHGKDR SSNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRRPLVRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3463434