PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04348.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 395aa    MW: 42837.5 Da    PI: 10.5901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04348.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13139185455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zmw_sc04348.1.g00030.1.am.mk 139 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 185
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.4E-1442113IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-14138189No hitNo description
Gene3DG3DSA:4.10.280.102.4E-16138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16138190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-11139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSWSETDAAL FTAVLGRDAA HHLATTPPHV DGPATAALAP ELQDRLHDLV ERGGAWTYGI  60
FWQESRIVLG WGDGHCRDGE AAHGDTTEAQ SAARKSALLR LHALVDFTKL EPNGQAVVEE  120
RKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPKISKMDK ASLLSDAIAY  180
IQELEDRLRG GAKSPPAVEV KAMQDDVVLR VTTPLYAHPA SRVFHAIRDA RLSVVASELA  240
VADDAVTHTL MLRSPGPERL TAEAVLAAMS RGTEGRDTPS PPASVAYAPF TLTTGRSCAF  300
SAPSKSFLLR GRHPCDVWEP RHPRVVVKWK SGGGTRASDD AARMGAAGRG RQPRGLGLLR  360
PGPGEGTAGR RHPVGAGRGW RAWGISRKAT ADRLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25133188257Transcription factor MYC2
5gnj_B3e-25133188257Transcription factor MYC2
5gnj_E3e-25133188257Transcription factor MYC2
5gnj_F3e-25133188257Transcription factor MYC2
5gnj_G3e-25133188257Transcription factor MYC2
5gnj_I3e-25133188257Transcription factor MYC2
5gnj_M3e-25133188257Transcription factor MYC2
5gnj_N3e-25133188257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RKPRKRGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682967.13e-75LOW QUALITY PROTEIN: transcription factor bHLH13-like
TrEMBLA0A0E0JN045e-98A0A0E0JN04_ORYPU; Uncharacterized protein
STRINGOPUNC01G27950.19e-99(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944