PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc04345.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 13697.6 Da PI: 11.6543 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 42 | 62 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+++F++ L rH Zmw_sc04345.1.g00030.1.sm.mk 42 FECKTCSRRFPSFQALGRHRA 62 89**************99975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.4E-9 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.023 | 80 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MERLTFGQEE PEASIVSVAQ EVMLLLARAG GGGEPSAAPH VFECKTCSRR FPSFQALGRH 60 RARRGLPLQG RRSRPRHGRT ALGGHMRRHR AVAVEGASAR GLPEGEAERK ADQAQGSLSL 120 DLNLAPP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795407.1 | 4e-36 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2T7BZ26 | 1e-35 | A0A2T7BZ26_9POAL; Uncharacterized protein | ||||
STRING | Sb01g003300.1 | 4e-35 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |