PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04328.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 262aa MW: 29797.8 Da PI: 9.2759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04328.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	84	103	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zmw_sc04328.1.g00060.1.sm.mk 84 FICHVCSKTFNRYNNMQMHM 103 89*****************9 PP
2	zf-C2H2	12.9	0.00033	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Zmw_sc04328.1.g00060.1.sm.mk 171 FGCRRCGKPFAVKGDWRTHEKNC 193 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-5	70	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-5	84	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.138	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.71E-5	155	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDEEDEEENT EDSEEDEKPI RQRDEKCKAE GGDDQRARIE MVEGSSDCLR VGGEASMIKG 60 IFTSRGRRFW IPTPAQILVG PVQFICHVCS KTFNRYNNMQ MHMWGHGREY RKGPESLKQG 120 TQAATVALLK LPCYCCSPGC RNNVSHPRAR PLKDFRTLQT HYKRKHGAKH FGCRRCGKPF 180 AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGG GHLPVAPDHQ QVPAAAAVPP 240 QPSRQRIIRF DQAAAPWNRN LA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961925.1	1e-135	protein TRANSPARENT TESTA 1
Swissprot	Q8W030	2e-92	ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBL	K3Z6X6	1e-133	K3Z6X6_SETIT; Uncharacterized protein
STRING	Si022296m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]