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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04302.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 394aa MW: 43509.4 Da PI: 4.8398 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.9 | 7.9e-11 | 143 | 186 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g Zmw_sc04302.1.g00020.1.sm.mkhc 143 HHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 186 6679******988422...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.43 | 11 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-4 | 30 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-9 | 34 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-9 | 35 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.71 | 107 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-5 | 143 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-14 | 143 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-19 | 143 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-14 | 143 | 196 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.07E-20 | 144 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MVNFDTRLTS LFRLCCLCSV HGGGARFSLH SGWRRARAVY LGAYEDEEAA ARAHDLAALK 60 YWGPGTVLNF PLCSYDDELK EMEGQSREEY VGSVRRKSSG FSRGVSKYRG VARFSSCKLA 120 LSIGSPAELT NNLQFISLAL MMHHHNGRWE ARIGRVLGNK YLYLGTYATQ EEAAVAYDIA 180 AIEHRGLNAV TNFDISHYVT WHRRRRRRGL GEQDGLDAIE LPNDLTEHAR TTADLDETEV 240 AVAAAFLEAD HLQHQDHIAD SYTEQVPDDQ EMMLDQLLLL HSPRFEEIME QVSGAASATM 300 TESNASSSPS PSACTSSSAP SSLSQPSPKR QPEPSSSAAA RCGFPDDVQT YFECDDDGIG 360 FAFAEVDTFL FGDLGAYAAP MFQCDLDVFV SERT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 207 | RRRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973570.1 | 1e-110 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A368RM59 | 1e-108 | A0A368RM59_SETIT; Uncharacterized protein | ||||
STRING | Si013842m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |