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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04300.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 118aa MW: 12772.7 Da PI: 8.9966 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.5 | 6e-10 | 16 | 39 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zmw_sc04300.1.g00010.1.sm.mkhc 16 CNGCPTILVYNRGATNIRCPNCRT 39 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.5E-9 | 14 | 41 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-9 | 16 | 39 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.9E-4 | 52 | 81 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-6 | 55 | 79 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MFHSLQQQEE MSELVCNGCP TILVYNRGAT NIRCPNCRTL NSAKSGASQI GQLQCGRCPT 60 TLAYQLGAST VGCPRCRHVN PVRDARAPQT VLVENPKTLD EKGKLVSSVA VGVASWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307436.1 | 1e-50 | uncharacterized protein LOC107275235 | ||||
Refseq | XP_021320000.1 | 8e-51 | protein LOL4 isoform X3 | ||||
Refseq | XP_021320001.1 | 8e-51 | protein LOL4 isoform X3 | ||||
Swissprot | Q84UR0 | 3e-47 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A1D6LEY8 | 2e-49 | A0A1D6LEY8_MAIZE; Protein LSD1 | ||||
TrEMBL | A0A3L6E707 | 2e-49 | A0A3L6E707_MAIZE; Protein LOL4 | ||||
STRING | GRMZM2G060057_P01 | 4e-50 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Publications ? help Back to Top | |||
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