PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04286.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 353aa MW: 38167.4 Da PI: 7.5573

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04286.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.3e-32	206	263	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ Zmw_sc04286.1.g00060.1.sm.mkhc 206 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKHVERSYQDPSTVITTYEGKHTHH 263 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-34	190	265	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-29	198	265	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	200	265	IPR003657	WRKY domain
SMART	SM00774	1.8E-37	205	264	IPR003657	WRKY domain
Pfam	PF03106	4.0E-25	206	263	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSSGGVGGGD HHGDYHDQHG RGHLACADGG TDYVFNNHDM ESFFFNQPTA AGAVGGGGGR 60 TGANELMPPY SSITDYLQGF LDPAGLARHL DVPFSADDAP VKNELSVDAS HDSQGTTGVA 120 GSEGAALLAP KSSGSLSSSD REGEGQPGRS RKGRAKQAED AGLVDQRDLE EGENSLKANK 180 PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTPKCGVKK 240 HVERSYQDPS TVITTYEGKH THHSPASLRA CGGHLFMPNA HALPPHLMPS GFRPDLMSVM 300 HPMSMGANPN KYFMPSMPPP PVPTSPAPPL HQNHFTDYAL LQDLFPSNMP NNP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSSGGVGGGD HHGDYHDQHG RGHLACADGG TDYVFNNHDM ESFFFNQPTA AGAVGGGGGR  60
TGANELMPPY SSITDYLQGF LDPAGLARHL DVPFSADDAP VKNELSVDAS HDSQGTTGVA  120
GSEGAALLAP KSSGSLSSSD REGEGQPGRS RKGRAKQAED AGLVDQRDLE EGENSLKANK  180
PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTPKCGVKK  240
HVERSYQDPS TVITTYEGKH THHSPASLRA CGGHLFMPNA HALPPHLMPS GFRPDLMSVM  300
HPMSMGANPN KYFMPSMPPP PVPTSPAPPL HQNHFTDYAL LQDLFPSNMP NNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-31	198	266	10	78	Probable WRKY transcription factor 4
2lex_A	7e-31	198	266	10	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455987.1	1e-166	probable WRKY transcription factor 71
TrEMBL	A0A3L6F9V2	1e-167	A0A3L6F9V2_MAIZE; Putative WRKY transcription factor 71
STRING	Sb03g028530.1	1e-166	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173