PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zmw_sc04174.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 459aa MW: 49135.8 Da PI: 5.2333

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04174.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	250	9.4e-77	183	458	3	283
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalk 82 + Ll+c + + d+ la L +++ a dgdp +R+a+yf+ ALa+rla + + ++a+ ++ + s+e + +k Zmw_sc04174.1.g00010.1.sm.mk 183 QSLLACSRTAA-ADAGLAAVELVKVRAAAFDDGDPAERVAFYFADALARRLACdGGARPSSAVDCRFA----SDELTLCYK 258 78999999655.588899999999**************************9444555555555555....699999* PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeelee 160 ++++++P+ kf+hltaNqaIleav ++++Hi+Df+i qG+QW+aLlqaL++Rpeg+p ++Ri gv sp g + +l + Zmw_sc04174.1.g00010.1.sm.mk 259 TLNDACPYSKFAHLTANQAILEAVGAATKIHIVDFGIVQGIQWAALLQALTTRPEGKPsRVRISGVPSPFLGskPTASLAA 339 ****************************************************887769****9887889999* PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 t rL++fA+ lgv+fef + + + +++l +++ v+++E++aVn++lql++lld++ ++ + +vL+l ksl+P vv++ Zmw_sc04174.1.g00010.1.sm.mk 340 TSARLRDFAKLLGVDFEFVP-LLRPVHELGRSDFLVERDETVAVNFMLQLYHLLDDTDEQVK---RVLRLAKSLNPSVVTL 416 ******************.599**************************88888888...************ PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 e e+++n+ F++rf++al yy+++f+sl++ ++r+s er+ Zmw_sc04174.1.g00010.1.sm.mk 417 GEYEVSLNRVGFVDRFANALCYYMSVFESLDVAMARNSPERA 458 ************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	3.14E-5	15	57	No hit	No description
SuperFamily	SSF81995	3.14E-5	99	140	No hit	No description
PROSITE profile	PS50985	46.382	155	459	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-74	183	458	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQHQRH HHHHLPPIPM PPRHAPPGQA LPHGQIPAAS 60 YGGGAWPHSE HFFADPFVGG PPAADAVFSD ISGAADFDSD GWMESLIAEA PVFADSDLDY 120 LIFTTPPPPV PLPAPAPEPV EEAASLQPKA AAPVSVPQPA TATPTACSSP NSLDASCSAP 180 ILQSLLACSR TAAADAGLAA VELVKVRAAA FDDGDPAERV AFYFADALAR RLACDGGARP 240 SSAVDCRFAS DELTLCYKTL NDACPYSKFA HLTANQAILE AVGAATKIHI VDFGIVQGIQ 300 WAALLQALTT RPEGKPSRVR ISGVPSPFLG SKPTASLAAT SARLRDFAKL LGVDFEFVPL 360 LRPVHELGRS DFLVERDETV AVNFMLQLYH LLDDTDEQVK RVLRLAKSLN PSVVTLGEYE 420 VSLNRVGFVD RFANALCYYM SVFESLDVAM ARNSPERAR

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MAYMCADSGN LMAIAQQVIQ QQQQQQHQRH HHHHLPPIPM PPRHAPPGQA LPHGQIPAAS  60
YGGGAWPHSE HFFADPFVGG PPAADAVFSD ISGAADFDSD GWMESLIAEA PVFADSDLDY  120
LIFTTPPPPV PLPAPAPEPV EEAASLQPKA AAPVSVPQPA TATPTACSSP NSLDASCSAP  180
ILQSLLACSR TAAADAGLAA VELVKVRAAA FDDGDPAERV AFYFADALAR RLACDGGARP  240
SSAVDCRFAS DELTLCYKTL NDACPYSKFA HLTANQAILE AVGAATKIHI VDFGIVQGIQ  300
WAALLQALTT RPEGKPSRVR ISGVPSPFLG SKPTASLAAT SARLRDFAKL LGVDFEFVPL  360
LRPVHELGRS DFLVERDETV AVNFMLQLYH LLDDTDEQVK RVLRLAKSLN PSVVTLGEYE  420
VSLNRVGFVD RFANALCYYM SVFESLDVAM ARNSPERAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-165	178	459	1	282	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q9SCR0, ECO:0000269\|PubMed:27081181}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310559.1	0.0	scarecrow-like protein 4
Swissprot	Q53K16	0.0	SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBL	A0A1B6QID4	0.0	A0A1B6QID4_SORBI; Uncharacterized protein
STRING	Sb01g009740.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8569	37	48

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]