PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04130.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 459aa MW: 50033.1 Da PI: 9.5519

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04130.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	249.8	1e-76	61	452	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetse.knsseelaal 81 +++++ c+ a++ g+ a+a+L+ +s asp gd ++R+a+ f+eA a+r + ++l a++ + + ++ + aa+ Zmw_sc04130.1.g00010.1.am.mk 61 KHVIMYCVAAIDMGNVMTASAALQSISSVASPLGDHLKRVAFTFAEAFARRAMWLLPGLTWAMQLQVPPLpMTPEAINAAR 141 7899************************************************999999776655404455555677 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 + f ++P+++++ + N+aIl a++ e++vH++D++ ++ QW+ L++ +a+R+++ppslR+ +v++ + + l++t+ Zmw_sc04130.1.g00010.1.am.mk 142 RSFAALCPLVRVAATAVNHAILGATAAERAVHVVDLGGANPNQWLELIRLFAARSRSPPSLRLSVVNE----EDDFLSSTA 218 77***************************************************************....99*** PP GRAS 163 erLakfAeelgvpfefnvl..vakrledleleeLrvkp.gEalaVnlvlqlhrll...........desvsleserdevLk 229 L++ A +lgv+f fn++ ++++ ++++Lr+ + +Eal++ + lqlhrl +e+ ++ + d++L+ Zmw_sc04130.1.g00010.1.am.mk 219 GLLTQEAVRLGVNFLFNPVrsNIDHFTPTDVSALRIVEgREALVITSTLQLHRLIadevtinlpgvAENNMIT-KADALLR 298 **************7444445666689999999999***********666666666644444444.59* PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerre 307 ++++ +Pk+vv++eqea hn+e + r+ +a++yy+alf le++++ + +r+ vEr+ll++e++++va g rre Zmw_sc04130.1.g00010.1.am.mk 299 VLRDQKPKLVVLTEQEAHHNDEALKCRVKNAFDYYAALFHDLETGAGGLAsgvADRVAVERVLLRNEVMDIVAGDGVLRRE 379 **************************************99855444455************************ PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrve.eesgslvlgWkdrpLvsvSaWr 374 rhe+ +W r++ aGF+p+p+++ + k+ + ++ g yr + + g+++l+ ++ p++svS+Wr Zmw_sc04130.1.g00010.1.am.mk 380 RHEKITRWLTRMTVAGFEPIPMTYGVIKETAIAAHLLSGSGsnmrmYRAQkVNTGCIFLYARKIPIFSVSVWR 452 *******************99888765555555444422223666634588999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.188	34	426	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-74	61	452	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MNPEGSNNKK GKAVVVKKEP SSLPMLVDAA SPAVPPPLPA APMANIPRPH QYGENRSLFI 60 KHVIMYCVAA IDMGNVMTAS AALQSISSVA SPLGDHLKRV AFTFAEAFAR RAMWLLPGLT 120 WAMQLQVPPL PMTPEAINAA RRSFAALCPL VRVAATAVNH AILGATAAER AVHVVDLGGA 180 NPNQWLELIR LFAARSRSPP SLRLSVVNEE DDFLSSTAGL LTQEAVRLGV NFLFNPVRSN 240 IDHFTPTDVS ALRIVEGREA LVITSTLQLH RLIADEVTIN LPGVAENNMI TKADALLRVL 300 RDQKPKLVVL TEQEAHHNDE ALKCRVKNAF DYYAALFHDL ETGAGGLASG VADRVAVERV 360 LLRNEVMDIV AGDGVLRRER HEKITRWLTR MTVAGFEPIP MTYGVIKETA IAAHLLSGSG 420 SNMRMYRAQK VNTGCIFLYA RKIPIFSVSV WRPVMSGTE

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MNPEGSNNKK GKAVVVKKEP SSLPMLVDAA SPAVPPPLPA APMANIPRPH QYGENRSLFI  60
KHVIMYCVAA IDMGNVMTAS AALQSISSVA SPLGDHLKRV AFTFAEAFAR RAMWLLPGLT  120
WAMQLQVPPL PMTPEAINAA RRSFAALCPL VRVAATAVNH AILGATAAER AVHVVDLGGA  180
NPNQWLELIR LFAARSRSPP SLRLSVVNEE DDFLSSTAGL LTQEAVRLGV NFLFNPVRSN  240
IDHFTPTDVS ALRIVEGREA LVITSTLQLH RLIADEVTIN LPGVAENNMI TKADALLRVL  300
RDQKPKLVVL TEQEAHHNDE ALKCRVKNAF DYYAALFHDL ETGAGGLASG VADRVAVERV  360
LLRNEVMDIV AGDGVLRRER HEKITRWLTR MTVAGFEPIP MTYGVIKETA IAAHLLSGSG  420
SNMRMYRAQK VNTGCIFLYA RKIPIFSVSV WRPVMSGTE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-30	60	452	4	375	GRAS family transcription factor containing protein, expressed
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303827.1	1e-122	scarecrow-like protein 3
TrEMBL	K3ZDF1	1e-136	K3ZDF1_SETIT; Uncharacterized protein
STRING	Si024587m	1e-136	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13716	13	30