PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc04092.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 22978.3 Da PI: 4.531 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 5e-18 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +grWv+eIr p++ r r++lg++g+ae+Aa+a +aa+ +l+g+ Zmw_sc04092.1.g00060.1.am.mk 19 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYGSAEKAARAFDAAAVCLRGA 69 7******99.**********933...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.456 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-18 | 19 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-31 | 19 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 19 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-27 | 19 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.21E-18 | 19 | 79 | No hit | No description |
PRINTS | PR00367 | 3.7E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MDDGAEASRG ESSSPPERRY KGVRLRKWGR WVSEIRMPNS RERIWLGSYG SAEKAARAFD 60 AAAVCLRGAR AGSLNFPESP PNVRYIPGAQ LTPEQIQAEA VRHANQPASP VAAATPAGRG 120 SNDRTPFSSA PTSTTTCNGL ATPGDDELDW SFMDELPSMP ASSAGTNAEL VPAMDDFMVG 180 SPHPVMPPSE GRAQDMVDDD DDHAFISDDL WRF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973610.1 | 4e-96 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q9S7L5 | 2e-33 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | K3YLA4 | 1e-94 | K3YLA4_SETIT; Uncharacterized protein | ||||
STRING | Si015027m | 2e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Publications ? help Back to Top | |||
---|---|---|---|
|