PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04082.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 758aa    MW: 81614 Da    PI: 6.6772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04082.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.5e-1303867571374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......s 74 
                                   lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALaarl+ s +  +++ +p+  +          s
  Zmw_sc04082.1.g00010.1.sm.mk 386 LVHLLLACADFVSKGDQPSALRHLHLLRSVASPLGDSMQRVASYFADALAARLTLSANPSSSSSTPRGRTAGVapypfppS 466
                                   68****************************************************97777777666666655447999**9* PP

                          GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgsk 155
                                    e+l++++++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+     +
  Zmw_sc04082.1.g00010.1.sm.mk 467 PETLKIYQILYQACPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PA 543
                                   ***************************************************************************....88 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                    +++etg+ L+++A++l+vpfef++ va++le l++++L+ + gEalaVn v +lhr++   ++l      +L+++++  P
  Zmw_sc04082.1.g00010.1.sm.mk 544 AAVRETGRHLSSLAASLRVPFEFHAAVADKLERLRPNALQRHVGEALAVNAVNRLHRVP--GAHLG----PLLSMIRDQAP 618
                                   **********************************************************9..44444....5********** PP

                          GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                                   k++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s  r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+
  Zmw_sc04082.1.g00010.1.sm.mk 619 KIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRR 699
                                   ********************************************************************************* PP

                          GRAS 318 rleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    +e  GF+pvpls  a+ q + ll  ++ +dgyr+ e++g+l+lgW+dr+++++SaWr
  Zmw_sc04082.1.g00010.1.sm.mk 700 LMEGQGFEPVPLSPAAVGQSQVLLGLYGaGDGYRLTEDKGCLLLGWQDRAIIAASAWR 757
                                   *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.358360736IPR005202Transcription factor GRAS
PfamPF035143.3E-127386757IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGVLNLVDTN SGVKLQQQQA PTSPTASVSE SNIVVSSADP DANDALAGLQ ALRFDGDIDV  60
EIQSPELAMW ESLFADQIGA SGAEFLMFSP RRDYMATGSP RRDFMISSPK RDYMVSSPKR  120
DYMISSPKRD YMVSSPKREY MVTSPRRDMV SSPRRSTFSN LYSTSTSSHG VNHQQGYLHG  180
MQGAEGSGGP IQQQYGNLAN HGKGRSMSPL HKVYINNAHS NSGKSNGPSS LSCSSSYGHG  240
ENLALPSMDP FLDDYKEGGY LGYSVPGKPG VEKYGAASAT VTTVAASSSQ LPTLSECLAM  300
PEPVYGGNAE GVTAATMAAS GGLQMGGGLQ HGIFYEGQFV EGGDGLSLQH QMAKADQWAT  360
DPSLHSMLGS VIQAEAEQEQ DSGLQLVHLL LACADFVSKG DQPSALRHLH LLRSVASPLG  420
DSMQRVASYF ADALAARLTL SANPSSSSST PRGRTAGVAP YPFPPSPETL KIYQILYQAC  480
PYIKFAHFTA NQAIFEAFHG EDRVHVVDLD ILQGYQWPAF LQALAARPGG PPTLRLTGVG  540
HPAAAVRETG RHLSSLAASL RVPFEFHAAV ADKLERLRPN ALQRHVGEAL AVNAVNRLHR  600
VPGAHLGPLL SMIRDQAPKI MTLVEQEAGH NGPYFLGRFL EALHYYSAIF DSLDATFPAD  660
SAPRMKVEQC LLAPEIRNVV ACEGAERVAR HERLDRWRRL MEGQGFEPVP LSPAAVGQSQ  720
VLLGLYGAGD GYRLTEDKGC LLLGWQDRAI IAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-8339375625377Protein SCARECROW
5b3h_D6e-8339375625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828284.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1E5VBF20.0A0A1E5VBF2_9POAL; DELLA protein GAI1
STRINGSi027708m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]