PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04079.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 353aa MW: 38533.8 Da PI: 7.4604 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 177 | 196 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ Zmw_sc04079.1.g00080.1.am.mk 177 FSCAVCNKTFNRFNNMQMHM 196 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 267 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ Zmw_sc04079.1.g00080.1.am.mk 267 YACRRCGKRFAVRGDWRTHEKNC 289 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.11E-5 | 172 | 198 | No hit | No description |
SMART | SM00355 | 0.64 | 177 | 199 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 177 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.055 | 177 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 230 | 262 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.93E-6 | 252 | 287 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 253 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 58 | 267 | 287 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.704 | 267 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MHSYRAMHPY STHQYHHTSL PSSKQGGEDN DDDQSMLRLS LWPPGHHHSM AASPACSSSP 60 SIISTTSMTA ATAASYPWLN QQGHYSNGGG GGVMGSSSSS HGSFLFHEQQ QQQEPDVSIS 120 LSIAPPRSNA SAVCGGGFAA PAALPSTVTT VTPGGSQVPS QYWIPSAAEI LVGSTQFSCA 180 VCNKTFNRFN NMQMHMWGHG SQYRKGSESL RGAITVGTAP PASLMRLPCY CCAEGCRNNI 240 DHPRARPLKD FRTLQTHYRR KHGARPYACR RCGKRFAVRG DWRTHEKNCG KLWFCVCGSD 300 FKHKRSLKDH VRSFGGGHAP HIAESVAVED DEDEDDDHED ADQMDEPSDM VVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460014.1 | 1e-168 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-99 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | C5X919 | 1e-167 | C5X919_SORBI; Uncharacterized protein | ||||
STRING | Sb02g020840.1 | 1e-168 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 |