PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04067.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 557aa    MW: 59596.9 Da    PI: 5.2498
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04067.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30309368159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Zmw_sc04067.1.g00010.1.sm.mkhc 309 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 368
                                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31294370IPR003657WRKY domain
SuperFamilySSF1182902.88E-27302370IPR003657WRKY domain
PROSITE profilePS5081128.529304370IPR003657WRKY domain
SMARTSM007741.4E-37309369IPR003657WRKY domain
PfamPF031061.0E-26310368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEAGREE DDRSSGGDGD GRSKDGEMDK EEGQLKKHGE ALKLETKEEK  60
VVEVVVDQGG KGSKKEIKFR TQPGDAMEED KQLADEGEGD DESDGAETRA EDKHVVEDAG  120
NRNAGDNHTA MEQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQQTD  180
EPKEPEVFLS LGAAAGVRAE PKLKRKEQAT PRRPSLSSDD TDDGKEDLGL SLSLGTYDED  240
KLEAGHDRDD ATAAGDGREK GYALLESSKL GPPPPAGDLV AAGITSQSVN PANRKTRVSV  300
RVRCQGPTMN DGCQWRKYGQ KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT  360
YEGTHNHPLP VGATAMASTT SAAATFMLHS STSSSASISD VGGATAAPPY LSPYLLNSAS  420
HHSAASSLLS PPPSIYGSSG LQHLNLFGHS SSSVLSQQAP HLGKYPWSSP SALGTISGLT  480
TGGKRPFWST GSGDEKTTTL PDNVGAVMSD PSKFSMAIAT AINNFMGKEG QTTGGKDGES  540
SSKSNNKWGV VESLPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-213093701777Probable WRKY transcription factor 4
2ayd_A3e-21296372176WRKY transcription factor 1
2lex_A4e-213093701777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452890.10.0probable WRKY transcription factor 9
TrEMBLC5XSY10.0C5XSY1_SORBI; Uncharacterized protein
STRINGSb04g034440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446