PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04050.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 487aa    MW: 52493.1 Da    PI: 11.3077
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04050.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-20360394135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
  Zmw_sc04050.1.g00070.1.am.mk 360 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 394
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-19354406IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.259354411IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-13356394No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17358394IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.29E-13359391No hitNo description
PfamPF003207.9E-18360394IPR000679Zinc finger, GATA-type
PROSITE patternPS003440360385IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGRRRPSGHR PARARGLDTY AAATYAPVTV SEPPHGRAFL QRTRRRGSGR SGSAAASSTL  60
LTRRPMRPDR GYEFRWQGNN ASIHCTAPRD PRGRRRWRRR ARRCAYARAR PLARPRGRLF  120
HGSHAFDRAG PCPCAPARES FDAPRLSTMI EGRTRRLSCK PCFAWREASA ARSLPWRQLF  180
RSISGPVVTK GPEQSLVTAT PTRVRAMAAA AIGPVSSDQS VRRVEPALRC DTTMLDRYHN  240
QSSSMVASTT FSLFFPPLPK VGQWPDEDDH SSITTSPSSP SSSSTGSVDC TLSLGTPSSR  300
RASAAAEPMT KHVALPPPAH PSYVAWDDVV GGHQSSDYCR KPAGGAAKAG AHDAFADRRC  360
ANCGTSSTPL WRNGPRGPKS LCNACGIRFK KEERRAAATA AMETGAGASA RCGYSAQRAQ  420
YEYAAAVARA SPCEGSFPCG GGVDADANAS ANTNAPFLPW RLNVVAPAPA PAFAAVWPER  480
TSLFQYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191101RGRRRWRRRAR
294102RRWRRRARR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963570.19e-56GATA transcription factor 15
SwissprotQ6L5E52e-41GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A3L6R8D03e-57A0A3L6R8D0_PANMI; GATA transcription factor 19-like
STRINGPavir.Ca00998.1.p4e-55(Panicum virgatum)
STRINGSi022366m8e-55(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]