PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04039.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 667aa    MW: 74795 Da    PI: 10.9948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04039.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1384171197
                                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ffkv+     ++++ + +p +fa+++ +   ++s  + led+ g +W+v+l  r ++    l+ GW++Fv ++ +  g+f+
  Zmw_sc04039.1.g00040.1.am.mk  84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156
                                   66666..4555555.99******99952..2343.7***************..77777799******************** PP

                                   EEEE-SSSEE..EEEEE CS
                            B3  81 vFkldgrsefelvvkvf 97 
                                   vF+ + rs f   v++f
  Zmw_sc04039.1.g00040.1.am.mk 157 VFRQIARSVF--AVQMF 171
                                   ***8887877..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-1981173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-1781174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.85881174IPR003340B3 DNA binding domain
CDDcd100175.01E-982171No hitNo description
SMARTSM010191.0E-1084174IPR003340B3 DNA binding domain
PfamPF023622.3E-1084170IPR003340B3 DNA binding domain
SMARTSM010190.11240317IPR003340B3 DNA binding domain
CDDcd100174.74E-9256312No hitNo description
Gene3DG3DSA:2.40.330.108.9E-10257316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-12259316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.009262322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAVTALKKEQ EDGVVHIDSG EEEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI  60
HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF  120
GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFAVQM FAPSAIERLY  180
LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RTDAQSDEVP DDCKMSADLC  240
IDELPSRLPV IPRTKKQGRK VVVLKDPFNR LWPVLYQCTP RFSGFITGWV EISRENSLRE  300
GDTCEFELSG KKEFSFQNTF GFALSRPLTR REGGRNSVWC PSESAVELMN ERLLAMAERA  360
RCLRVSVTRQ LICTARDSLP LLNKRTGINK GAAPLREYSA GQRLPTSSNT GGTAGEPKKE  420
WKKSDRGLGM HTSSQAQHHY YTSVHHPLAS VLCLSNVPFS RRRRKVCICI AARRAKRNLG  480
VRTLPRESYR VSREDNPAYH GHSGRHRHHG ASGTGSAPWL RAMERVLGLE CRAPSRGFSR  540
SMRRPAKATR RIQGRLEPKK MDEDVRTTDI PTRTDSLSCS RPIDQPGHQY LSTDLCVVIY  600
TSSCPTRHAL MTGRYIAVDG SVVMLTLVAT TWRDGADERP SFCAATMAAA GKISGGGGGL  660
RIMAFVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RRRKRKKKK
23236RKRKK
33238RKRKKKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240