PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04039.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 667aa MW: 74795 Da PI: 10.9948 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 84 | 171 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ffkv+ ++++ + +p +fa+++ + ++s + led+ g +W+v+l r ++ l+ GW++Fv ++ + g+f+ Zmw_sc04039.1.g00040.1.am.mk 84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156 66666..4555555.99******99952..2343.7***************..77777799******************** PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 vF+ + rs f v++f Zmw_sc04039.1.g00040.1.am.mk 157 VFRQIARSVF--AVQMF 171 ***8887877..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-19 | 81 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-17 | 81 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.858 | 81 | 174 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.01E-9 | 82 | 171 | No hit | No description |
SMART | SM01019 | 1.0E-10 | 84 | 174 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-10 | 84 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.11 | 240 | 317 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.74E-9 | 256 | 312 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-10 | 257 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-12 | 259 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.009 | 262 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MAVTALKKEQ EDGVVHIDSG EEEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI 60 HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF 120 GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFAVQM FAPSAIERLY 180 LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RTDAQSDEVP DDCKMSADLC 240 IDELPSRLPV IPRTKKQGRK VVVLKDPFNR LWPVLYQCTP RFSGFITGWV EISRENSLRE 300 GDTCEFELSG KKEFSFQNTF GFALSRPLTR REGGRNSVWC PSESAVELMN ERLLAMAERA 360 RCLRVSVTRQ LICTARDSLP LLNKRTGINK GAAPLREYSA GQRLPTSSNT GGTAGEPKKE 420 WKKSDRGLGM HTSSQAQHHY YTSVHHPLAS VLCLSNVPFS RRRRKVCICI AARRAKRNLG 480 VRTLPRESYR VSREDNPAYH GHSGRHRHHG ASGTGSAPWL RAMERVLGLE CRAPSRGFSR 540 SMRRPAKATR RIQGRLEPKK MDEDVRTTDI PTRTDSLSCS RPIDQPGHQY LSTDLCVVIY 600 TSSCPTRHAL MTGRYIAVDG SVVMLTLVAT TWRDGADERP SFCAATMAAA GKISGGGGGL 660 RIMAFVR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 38 | RRRKRKKKK |
2 | 32 | 36 | RKRKK |
3 | 32 | 38 | RKRKKKK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |