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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04023.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 20413.6 Da PI: 9.8214 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3e-06 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zmw_sc04023.1.g00020.1.sm.mk 21 FVCEVCNKGFQREQNLQLHRRGH 43 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zmw_sc04023.1.g00020.1.sm.mk 98 WKCDKCSKRYAVQSDWKAHSKIC 120 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.51E-8 | 20 | 43 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-6 | 20 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.1E-6 | 21 | 43 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 21 | 43 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 21 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-5 | 86 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.51E-8 | 93 | 118 | No hit | No description |
SMART | SM00355 | 140 | 98 | 118 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPLQAQRR 60 RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC 120 GTREYRCDCG TLFSRYAASP GDPFYYSYMM SASSFYPYMI AASWRRHGIV MGFCTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-21 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 2e-21 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446943.1 | 4e-99 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_021318855.1 | 4e-99 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | O22759 | 3e-86 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A1Z5REH8 | 6e-99 | A0A1Z5REH8_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Gb01057.1.p | 8e-99 | (Panicum virgatum) | ||||
STRING | LPERR04G17920.1 | 5e-99 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Publications ? help Back to Top | |||
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