PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03998.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 502aa    MW: 52878.4 Da    PI: 7.8667
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03998.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.32.2e-54802741200
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   lv++L++cA a+++gd + aq+ L   + +  a ++++ + R+a +f+ AL++rl+   ++ +   pp +      ++   
  Zmw_sc03998.1.g00040.1.am.mk  80 LVHVLVTCAGAIQAGDYSTAQSNLRDAHSIlaAISTATGIGRVAEHFAAALSQRLFPAYPHSA---PPPPP----PATPGE 153
                                   689***********************999985556669******************9444433...22222....234455 PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                    ++ f+e+ P+lkf++ taN aIl+a+eg++rvH++D+ ++qGlQWp L++aL++R++gpp lRiTg+g+  +g+++el+e
  Zmw_sc03998.1.g00040.1.am.mk 154 LQHQFYEAGPYLKFAYSTANMAILDAFEGCDRVHVVDLALMQGLQWPELIHALSKRRGGPPYLRITGIGPTPTGNRDELHE 234
                                   6677******************************************************************8888******* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                                    g rLa++A++l+vpf+f+ + a++l+ l++++L++ pgE
  Zmw_sc03998.1.g00040.1.am.mk 235 AGLRLAELARSLNVPFSFRRVCADQLDGLRPWMLNIVPGE 274
                                   *************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.42354274IPR005202Transcription factor GRAS
PfamPF035147.6E-5280274IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGSFTFGWPP MDPASFAALT GAVPLPSPSA TTNGAVYCVN PGLYASVQPH MLVQPAAPAA  60
APEADAARRQ QAEEAAAIRL VHVLVTCAGA IQAGDYSTAQ SNLRDAHSIL AAISTATGIG  120
RVAEHFAAAL SQRLFPAYPH SAPPPPPPAT PGELQHQFYE AGPYLKFAYS TANMAILDAF  180
EGCDRVHVVD LALMQGLQWP ELIHALSKRR GGPPYLRITG IGPTPTGNRD ELHEAGLRLA  240
ELARSLNVPF SFRRVCADQL DGLRPWMLNI VPGEGDGSLA LGWHDRPLYS VTAWRAAGAD  300
AAGAVIDTLQ GVGRDDGNGI RSSSTPPCDA THGHALTSCR CRAFCSFCSR QPQARTSQHA  360
AERSTNQEAD EAQTVRRINQ TTTAGAGVGR VCCRVGCHGG PFHQLLAQTS GSRQRSQQRA  420
SPSDGSNHDD DGAVVAASSV RGGRRGVRRG GESFLPEDLP RPSAQRRFNR VAAAGAEEAP  480
ALAPDAVAPF LARRSGLGCF SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-27623012231Protein SCARECROW
5b3h_D1e-27623012231Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963578.12e-99DELLA protein DWARF8
RefseqXP_025821834.15e-98DELLA protein SLR1-like
TrEMBLA0A1E5UN441e-104A0A1E5UN44_9POAL; DELLA protein DWARF8
STRINGSi024429m9e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138