PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03992.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27575.6 Da PI: 6.2198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.7 | 4e-15 | 27 | 70 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Zmw_sc03992.1.g00090.1.am.mk 27 RRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 70 466.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.714 | 21 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-25 | 27 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-22 | 27 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-23 | 27 | 77 | No hit | No description |
Pfam | PF00847 | 1.5E-8 | 27 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-17 | 27 | 78 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAFSELPKPC PADKPPLPSX XXXXXXRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA 60 YDRAALSMKG AQARTNFVYA HAHAAAVYRN NCPPFLAHPS TYVHAPSSTV HQYGGQQHSV 120 GASSSDNGSY HHHCYYSQSP AGSGERSMPL GVDRADGSLL AGGHDLLFSR ADDNSGYLSS 180 VVPASCLRPR SSAAAAEDLQ RFSDADAYGM LGLREDVDDM VAGFWAGAGD AEQLGAEMVA 240 SSSQGSDVYS PFSFLSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 28 | 77 | 12 | 62 | ATERF1 |
3gcc_A | 3e-15 | 28 | 77 | 12 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463362.2 | 9e-94 | ethylene-responsive transcription factor ERF086 | ||||
Swissprot | Q8H3Q1 | 2e-75 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A1B6QG58 | 2e-92 | A0A1B6QG58_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ba00192.1.p | 5e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 |