PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03979.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 83aa    MW: 9273.51 Da    PI: 10.1275
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03979.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-18741135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Zmw_sc03979.1.g00030.1.sm.mkhc  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRFRTKGS 41
                                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13548No hitNo description
CDDcd002022.57E-13640No hitNo description
PROSITE profilePS5011411.583740IPR000679Zinc finger, GATA-type
PfamPF003208.8E-16741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRFRTKG SLANYTPMHR RYDIVDDEPR  60
VSRLRPPASK PKAQKTEGNH EES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825662.18e-44GATA transcription factor 26-like isoform X1
RefseqXP_025825663.18e-44GATA transcription factor 26-like isoform X2
RefseqXP_025825664.18e-44GATA transcription factor 26-like isoform X3
SwissprotQ8W4H12e-28GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0A9DBB72e-42A0A0A9DBB7_ARUDO; Uncharacterized protein
TrEMBLA0A2S3I7V32e-42A0A2S3I7V3_9POAL; Uncharacterized protein
TrEMBLA0A2S3I8152e-42A0A2S3I815_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWQ22e-42A0A2T7CWQ2_9POAL; Uncharacterized protein
TrEMBLA0A2T8ICY32e-42A0A2T8ICY3_9POAL; Uncharacterized protein
TrEMBLK3Y9H14e-43K3Y9H1_SETIT; Uncharacterized protein
STRINGPavir.Ga01522.1.p1e-42(Panicum virgatum)
STRINGPavir.Gb01403.1.p4e-43(Panicum virgatum)
STRINGSi010863m6e-44(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464