PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03975.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 526aa    MW: 55603.1 Da    PI: 6.0347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03975.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00076178219
                                  EETTTTEEESSHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                                  +C++Cgk F++++ +  H
  Zmw_sc03975.1.g00040.1.sm.mk 61 VCKNCGKEFTSWERFLDH 78
                                  7***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552106080IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.93E-7228251No hitNo description
PROSITE profilePS5015710.221229256IPR007087Zinc finger, C2H2
SMARTSM003550.25229251IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-8229253IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576674.93E-7342369No hitNo description
SMARTSM003553.7347369IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182347369IPR007087Zinc finger, C2H2
PfamPF139124.4E-11347370IPR007087Zinc finger, C2H2
PROSITE patternPS000280349369IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MRAHSSSDDV FAGAGADDGD EPARGRGPSD DQWDAAGTSS STTPTYALRA NPNRQVRSCQ  60
VCKNCGKEFT SWERFLDHGR CNSDDEGRAE GSGSPRHSLS PSSEADDGEE DPAVSATEWS  120
KGKRSRRVKS VAALDDAPAT SSRRFMSGEE EDLANCLVML SSSNTEQAAT VTRTNTQQKQ  180
SASVSRERDR GPQLLHQISF LAQAPDPVMA LPSATTTIQY VSPAPRGMFE CKACKKEFTS  240
HQALGGHRAS HKKVKGCFAA RLESNVSKTP SHAAPVDRNE DNGKAVVVEG STHATTDTKP  300
SCNAGTDGDT NVGTTSETAA ALSMALAPVA AFNVAEAPSG KKNAKMHECS VCHRLFTSGQ  360
ALGGHKRCHW LTSSTADPTI PVANLSVPPI TEDLVGAVRH QLMLRPMVDA SEPALDLTIS  420
AKLSTLTPAP GSSTFHLDAS AQALHLQSSV EPGNASHRNT CGHDDNDVAA TASNAAQDES  480
ESISIKRARL TDLKDVVRMD EEASEPWLQV GIGSSSAGGD EKNSRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A1E5WGG60.0A0A1E5WGG6_9POAL; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262