PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03973.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 237aa MW: 28197.8 Da PI: 8.8435

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03973.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.9	3e-19	15	79	1	64
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W +qe+++Li+ar e+e++ + ++++k+ We+v++ +rerg++r++ qCk+kw+nl +ryk+ Zmw_sc03973.1.g00140.1.sm.mkhc 15 QWGEQETRELIAARGEIEREAVAaRRSAKTMWEAVAAWLRERGYRRTADQCKCKWKNLVNRYKRQ 79 7**************98877526899*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.0E-16	14	80	No hit	No description
CDD	cd12203	4.99E-16	14	78	No hit	No description
PROSITE profile	PS50090	7.364	16	73	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEAGGVGGRD ERVPQWGEQE TRELIAARGE IEREAVAARR SAKTMWEAVA AWLRERGYRR 60 TADQCKCKWK NLVNRYKRQL LESESGATVK KKLKRPSGNQ TSEESDDEED CGEESEGDKP 120 MHGRKRRADD KKQQPRRISE KSRVGTSSIH DLLQDFLVQQ QRIDMQWREM TEKRVQERLL 180 LEQEWRQTMQ KLEQERLMLE RSWMEREEQR RMREEARAEK RDALLTTLLN KLLQEDL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448463.1	1e-106	trihelix transcription factor GT-3b
TrEMBL	A0A059Q3B0	1e-112	A0A059Q3B0_9POAL; Transcription factor
STRING	Pavir.J40572.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37