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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zmw_sc03956.1.g00050.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
MIKC_MADS |
Protein Properties |
Length: 424aa MW: 47343.8 Da PI: 9.9455 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc03956.1.g00050.1 | genome | ZGD | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.1 | 4.9e-28 | 204 | 254 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
Zmw_sc03956.1.g00050.1.sm.mk 204 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKSHEFCS 254
79***********************************************96 PP
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2 | K-box | 62 | 2.3e-21 | 266 | 358 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81
yq++ g+sl+++++e++q+ l+ Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq+++ +lk ++++ +q+e+ +
Zmw_sc03956.1.g00050.1.sm.mk 266 YQQTVGTSLWTEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDVALK-----EYHVISTQTETYK 341
78899999*****************************************************97.....599********** PP
K-box 82 kkekelqeenkaLrkkl 98
kk k e+ ++L+++l
Zmw_sc03956.1.g00050.1.sm.mk 342 KKVKHSYEAYRNLQQEL 358
********999999986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MHYPEREEQE ANDDPEAKTV LTVVPKATPI LHSLPRIQHG ATDRTVKRPN GRRPGASFSR 60 ARHEASQARQ HGATGRHGQA RRPTLSPIRQ LSVTVARPGL VLATPKSLVF VLFTPPPPPP 120 PSPTPYHQQR QLERAPSPSF SSSLSLCLVH LTLFRVPVPA EFIISHQLLA LLDLKKSIAP 180 EKQLARSTTE DLDKKMGRGK IEIKRIENAT NRQVTYSKRR TGIMKKAREL TVLCDAQVAI 240 IMFSSTGKSH EFCSPGTDIK TIFDRYQQTV GTSLWTEQYE NMQRTLSHLK DINRNLRTEI 300 RQRMGEDLDG LEFDELRGLE QNVDVALKEY HVISTQTETY KKKVKHSYEA YRNLQQELGM 360 REEPAYGYVD NTGAGWDGAV AQLGGGGSAA TATATATDMY AFRVVPTQPN LHGVAYGSHD 420 LRLG
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Chen ZX, et al.
Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice. Planta, 2006. 223(5): p. 882-90 [PMID:16254725] - Zhang Q, et al.
Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull. J Genet Genomics, 2007. 34(6): p. 519-26 [PMID:17601611] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice. Plant Biotechnol. J., 2007. 5(6): p. 835-46 [PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development. Plant Cell Physiol., 2008. 49(5): p. 853-7 [PMID:18378529] - Xiao H, et al.
STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice. Plant J., 2009. 59(5): p. 789-801 [PMID:19453444] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer. Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604 [PMID:20888318] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] - Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58. Plant Sci., 2012. 183: p. 183-9 [PMID:22195592] - Ohmori S,Tabuchi H,Yatou O,Yoshida H
Agronomic traits and gene containment capability of cleistogamous rice lines with the superwoman1-cleistogamy mutation. Breed. Sci., 2012. 62(2): p. 124-32 [PMID:23136523] - Yun D, et al.
OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice. Mol Plant, 2013. 6(3): p. 743-56 [PMID:23300256] - Lombardo F, et al.
The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice. Plant Biotechnol. J., 2017. 15(1): p. 97-106 [PMID:27336225]
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