PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03936.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Nin-like | ||||||||
Protein Properties | Length: 311aa MW: 34644.2 Da PI: 8.1655 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.2 | 8.9e-25 | 1 | 43 | 10 | 52 |
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 l+k+F++++k+AAk Lgvc+T+LKriCRq+GI+RWP+Rki+++ Zmw_sc03936.1.g00070.1.es.mkhc 1 LRKHFAGSLKEAAKRLGVCPTTLKRICRQHGINRWPSRKIRKV 43 789**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 1.6E-23 | 1 | 43 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 15.812 | 1 | 63 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 1.3E-24 | 210 | 294 | No hit | No description |
SuperFamily | SSF54277 | 3.19E-22 | 211 | 294 | No hit | No description |
SMART | SM00666 | 3.7E-22 | 213 | 296 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 20.817 | 213 | 296 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.3E-16 | 214 | 295 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.49E-41 | 214 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
LRKHFAGSLK EAAKRLGVCP TTLKRICRQH GINRWPSRKI RKVGHSLKKL QMVIDSVHGA 60 EGTVQLSSLY ENFTKTSWSD RELQGDATYP LSEQNHHSEP SVLDQQCEGR FTSQTSGSNS 120 LSPCGSQSST SSHGCSSGSK SQQHISAPHL AIMQEVCMEE NQSSTLLRAS SHAEPHMLTE 180 ETPVTLFRSQ SPMLLSEKST EKVPGSQRSK PDSLKIKAMY GEERCIFRLQ PSWGFDKLKE 240 EIVRRFSIAK ETYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVK ILVNRTVQTV 300 LAPSIGLTGL T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797092.1 | 1e-164 | protein NLP1-like | ||||
Swissprot | Q10S83 | 1e-147 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | A0A3L6TQF2 | 1e-170 | A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2 | ||||
STRING | Pavir.J25840.1.p | 1e-164 | (Panicum virgatum) | ||||
STRING | Si034133m | 1e-162 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11025 | 32 | 41 |
Publications ? help Back to Top | |||
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