PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03911.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 574aa MW: 60921.8 Da PI: 8.4002

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03911.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	377	435	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+ Zmw_sc03911.1.g00030.1.am.mk 377 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKAVLVTTYEGTHNHP 435 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.0E-33	361	437	IPR003657	WRKY domain
SuperFamily	SSF118290	9.68E-28	369	437	IPR003657	WRKY domain
PROSITE profile	PS50811	29.78	371	437	IPR003657	WRKY domain
SMART	SM00774	8.5E-37	376	436	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	378	435	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MCSYGFVASS RPLPKSQQPS YRSTWTRFPP ASGTCHADAP SDAAGPPSPT RSHWSNSLLP 60 ADPSPFLTSP KSKPFRFTFR ARYVVVIDLV PLVRLVRPLA MRPPPIPSMD LAASRTQHHH 120 RQEEEEEEEK AMILSERGSR LRRSEIREVD FFSTGGGALA SPREREEGRG EDDGAGGNGG 180 GGSRERHGPS TGRDDNVVNT ALDLLTTAGA ANTVVGHGGG EGTVAGRTDH REVDMATVEG 240 ALRQAGEENR RLRQRLDDLT RSYSTLYYQL LQAQQQHQAS SASTNSTLLH QQQFTDPRML 300 SPVIRPPAPV VLDGGSDRAS SDGGSGEAED RRGQQDGTGT PERGENAEGG AGAAAADAPC 360 RRARVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCPV RKQVQRCAED 420 KAVLVTTYEG THNHPLPPAA AAMAKTTSAA AAMLLSGPAQ RPPSSVPTLP FPMYGFPGHR 480 PLMPPPTTVI GTDGRSRSAL ETMTAAITSD PNFTTVLAAA LSSIMAGGAD GASRLGAGDA 540 GDGNGEGAAE PTTAAAARET ALRTLLQRLH ESRH

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MCSYGFVASS RPLPKSQQPS YRSTWTRFPP ASGTCHADAP SDAAGPPSPT RSHWSNSLLP  60
ADPSPFLTSP KSKPFRFTFR ARYVVVIDLV PLVRLVRPLA MRPPPIPSMD LAASRTQHHH  120
RQEEEEEEEK AMILSERGSR LRRSEIREVD FFSTGGGALA SPREREEGRG EDDGAGGNGG  180
GGSRERHGPS TGRDDNVVNT ALDLLTTAGA ANTVVGHGGG EGTVAGRTDH REVDMATVEG  240
ALRQAGEENR RLRQRLDDLT RSYSTLYYQL LQAQQQHQAS SASTNSTLLH QQQFTDPRML  300
SPVIRPPAPV VLDGGSDRAS SDGGSGEAED RRGQQDGTGT PERGENAEGG AGAAAADAPC  360
RRARVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCPV RKQVQRCAED  420
KAVLVTTYEG THNHPLPPAA AAMAKTTSAA AAMLLSGPAQ RPPSSVPTLP FPMYGFPGHR  480
PLMPPPTTVI GTDGRSRSAL ETMTAAITSD PNFTTVLAAA LSSIMAGGAD GASRLGAGDA  540
GDGNGEGAAE PTTAAAARET ALRTLLQRLH ESRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-22	367	437	8	77	Probable WRKY transcription factor 4
2lex_A	4e-22	367	437	8	77	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699836.1	1e-124	probable WRKY transcription factor 47
TrEMBL	A0A1E5W7H0	1e-123	A0A1E5W7H0_9POAL; WRKY transcription factor 6
STRING	Pavir.J02788.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4358	32	60