PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03904.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 679aa MW: 77889 Da PI: 9.166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.6e-16 | 29 | 117 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 fk + +++g +++p kf++++++ + e + l+ +sg++W++ l +k++++ +l +GW +F ka++L+e+D +vF Zmw_sc03904.1.g00050.1.am.mk 29 FKLM--TGDFAKG-ISIPEKFVRNFKITE-E--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLVF 101 5555..4445555.9*******8887664.4..599999**********..****************************** PP EE-SS.SEE..EEEEE-S CS B3 83 kldgr.sefelvvkvfrk 99 + ++ s+f v+vf++ Zmw_sc03904.1.g00050.1.am.mk 102 TCRNErSSF--DVQVFEE 117 *65444665..9999875 PP | |||||||
2 | B3 | 42.6 | 1.1e-13 | 230 | 328 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f++vl +s+ ++ + +++p a++h +++s++++l+ ++ +sW+v++ y +s r++ +Fv++n+L+egD+ Zmw_sc03904.1.g00050.1.am.mk 230 FVTVLQKSHCQRRnNSMTIPSGLAADHL--EARSQDIILRRPHRkESWTVRY-YYTSSHRCIQNLQFFNFVRENKLREGDV 307 6667777776665588*********996..457889*****877699*****.777777777777799************* PP EEEEE-SS.SEE..EEEEE-S CS B3 80 vvFkldgr.sefelvvkvfrk 99 ++F+l++ ++ +++v+v+r+ Zmw_sc03904.1.g00050.1.am.mk 308 CLFELVKGaRRVTMTVHVVRR 328 ****99877999*****9997 PP | |||||||
3 | B3 | 51.4 | 1.9e-16 | 371 | 452 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +rl++p kf ++ ++ + +k +l+ +sg+ W v + +k++++ +t+GW +F+ a+gL+e+D +vF+++g+++f v Zmw_sc03904.1.g00050.1.am.mk 371 QRLIIPQKFGNALTLNANATKRFSLKAPSGEPWIVGV--TKHGDELCFTSGWGDFAVAHGLQENDLLVFTRSGKRSF--DV 447 57********99999999999****************..*******************************8877777..89 PP EEE-S CS B3 95 kvfrk 99 +vf++ Zmw_sc03904.1.g00050.1.am.mk 448 MVFDA 452 99886 PP | |||||||
4 | B3 | 32.4 | 1.6e-10 | 585 | 670 | 18 | 99 |
--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS B3 18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 l k+++++ ++ +s ++ l ++ ++W v++ y +++ r + + W +Fv++n+L+ D++vF+l+ g +++++v Zmw_sc03904.1.g00050.1.am.mk 585 LQKSHMNRKNNRLMRSHEVLLLRpgRKEQKWHVRY-YHGSGTRGFGCRRWVKFVRDNRLRRDDVCVFELVkkGGaRRTTMV 664 55666655543444556666666235569******.6666666666679*******************8744455777888 PP EEEE-S CS B3 94 vkvfrk 99 v+v+rk Zmw_sc03904.1.g00050.1.am.mk 665 VHVVRK 670 888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-16 | 21 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.506 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-17 | 25 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.73E-17 | 27 | 115 | No hit | No description |
Pfam | PF02362 | 1.7E-12 | 28 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-11 | 28 | 118 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.79E-17 | 224 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 225 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-13 | 228 | 327 | No hit | No description |
Pfam | PF02362 | 3.7E-12 | 230 | 328 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-8 | 230 | 329 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.715 | 231 | 329 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-19 | 356 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-18 | 356 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.211 | 358 | 453 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.13E-14 | 360 | 451 | No hit | No description |
SMART | SM01019 | 4.1E-9 | 361 | 453 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-13 | 370 | 452 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-11 | 574 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-14 | 574 | 670 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.19E-11 | 579 | 669 | No hit | No description |
SMART | SM01019 | 7.1E-5 | 581 | 671 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-8 | 599 | 670 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.883 | 602 | 671 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MVEKGCERCR EWQEHYYRKH MDVSKMSFFK LMTGDFAKGI SIPEKFVRNF KITEEAVDLK 60 VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV FTCRNERSSF DVQVFEESGC 120 VKTPSLFGPN MCRHFGETAG RRAEHYSLSD SDDTTMPSQL VGCPRDAWRE PDSPNSSSCH 180 VKHEAVEEEE SDDMYADSKY YYSRFANQLT NDEKEEVLGL APIGRDNPVF VTVLQKSHCQ 240 RRNNSMTIPS GLAADHLEAR SQDIILRRPH RKESWTVRYY YTSSHRCIQN LQFFNFVREN 300 KLREGDVCLF ELVKGARRVT MTVHVVRRKV QGRFALMDRQ GCASCQKWRD HRSQDASRTR 360 FIKFMARDFA QRLIIPQKFG NALTLNANAT KRFSLKAPSG EPWIVGVTKH GDELCFTSGW 420 GDFAVAHGLQ ENDLLVFTRS GKRSFDVMVF DASGCEKVSS FFMLGEGDPC RRKGFGGVKM 480 GGQRAEHCGL SDSDDDAGTP LRLVESARKA SASKKKSTAG RTNPGEESTE SPDSSHEEEQ 540 SDDRRAGSNC YYYSRSASVL TEDEREEALS LVSIRPGNPA FVTVLQKSHM NRKNNRLMRS 600 HEVLLLRPGR KEQKWHVRYY HGSGTRGFGC RRWVKFVRDN RLRRDDVCVF ELVKKGGARR 660 TTMVVHVVRK RNGRLVLLG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808343.1 | 1e-145 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 1e-111 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |