PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03904.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 316aa MW: 34677.6 Da PI: 11.2288

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03904.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.1	5.2e-35	254	308	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+ + Zmw_sc03904.1.g00010.1.am.mk 254 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGSTRKRPR 308 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-30	254	306	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.615	254	308	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-22	255	301	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	256	292	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MHARRIAFEL LQQSTSGLSG LSLKATKELA AGRALHAERI SPAGRPASVR PRRRMEILSL 60 SGGAPETRYA PIPAAERGSF DPSRIVFGVT TRRSRQLFVS STYTRKQRNA PSTSSDWSRP 120 CLSLLSPALY LPPPYESTGC RADEQSLSRE RDKRLCDTAP ASSSSAIQQL AVYIRNLLAQ 180 EPTTSAMEAP LYHLPVPIPA PGVPALPATL RQHDATIGAV IHQQQQHQAA AVITAQKKPP 240 PPTPPPTVMA TGREQCPRCA SRDTKFCYYN NYNTAQPRHF CRACRRYWTL GGSLRNVPVG 300 GSTRKRPRPA RPTRAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	308	KRPRP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367