PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03884.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 365aa MW: 37431.4 Da PI: 4.967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03884.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	189	234	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zmw_sc03884.1.g00040.1.am.mk 189 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 234 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.24E-13	182	238	No hit	No description
SuperFamily	SSF47459	4.58E-17	182	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-16	186	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	189	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MQPSGREMKG DSEGGQEDDF FNQLLSTPPT AWAELDSGKS PWELPAGSSE APAFDESALL 60 ASRLHHDQIG GDKPVMLHLS DLHGLAGVGG GEDGGNAGFL PLPLFTDRTR EDQALYNGFG 120 AAGTHGASAV QPFGQGGPMP AQSFGGGAAS AGGTATAGAP ASEATSRGGA APPRQQRVRA 180 RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQIQVKVL 240 SMSRLGGASA VAPLVANMSP EGNGNGTEIE NGSSSLRLTE QQVAKLMEED TGSAMQYLQG 300 KGLCLMPISL ASVISSATSS SLPTGGAGGP QRDSGSPATT SPPLANGASG GDSRTVRDAG 360 SGEKQ

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MQPSGREMKG DSEGGQEDDF FNQLLSTPPT AWAELDSGKS PWELPAGSSE APAFDESALL  60
ASRLHHDQIG GDKPVMLHLS DLHGLAGVGG GEDGGNAGFL PLPLFTDRTR EDQALYNGFG  120
AAGTHGASAV QPFGQGGPMP AQSFGGGAAS AGGTATAGAP ASEATSRGGA APPRQQRVRA  180
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQIQVKVL  240
SMSRLGGASA VAPLVANMSP EGNGNGTEIE NGSSSLRLTE QQVAKLMEED TGSAMQYLQG  300
KGLCLMPISL ASVISSATSS SLPTGGAGGP QRDSGSPATT SPPLANGASG GDSRTVRDAG  360
SGEKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	198	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00462	DAP	Transfer from AT4G30980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809006.1	1e-140	transcription factor bHLH82-like
Swissprot	Q9ZUG9	3e-72	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2S3GUI2	1e-139	A0A2S3GUI2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7FD95	1e-139	A0A2T7FD95_9POAL; Uncharacterized protein
STRING	Pavir.Ab03158.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]