PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03883.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33444.3 Da    PI: 6.3069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03883.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20158208255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++tae+Aa a+++a+ +++g
  Zmw_sc03883.1.g00040.1.am.mk 158 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 208
                                   8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-29157216No hitNo description
Gene3DG3DSA:3.30.730.105.2E-32157216IPR001471AP2/ERF domain
PROSITE profilePS5103224.25158216IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-23158218IPR016177DNA-binding domain
SMARTSM003802.2E-38158222IPR001471AP2/ERF domain
PfamPF008472.7E-14158208IPR001471AP2/ERF domain
PRINTSPR003671.1E-10159170IPR001471AP2/ERF domain
PRINTSPR003671.1E-10182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLLNPVSEAL VRDSIRQHLL EESAAVVKEE EATTRPAYRR SASFGSLVAD QWSDSLPFRT  60
DDADDMVVFG ALRDAFAYGW LPDGSFAAVK PEPLPSPDCS SCSYDRSYSF GVAEPPLTPG  120
SSCTTDQATP KREEPEQEQV QEQEQEQAAA AAVARGKHYR GVRQRPWGKF AAEIRDPAKN  180
GARVWLGTYD TAEDAALAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA AGHKRPSPKP  240
ATSSDSSSFS SSSSSSGSPK RRKRGEAAAA AMSLPLVPPP SQLSRPAQPW FPAVPAEQVV  300
AIAPRVEQLV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-39154221168ATERF1
3gcc_A1e-39154221168ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826088.11e-119ethylene-responsive transcription factor 2-like
TrEMBLA0A0A9QX361e-120A0A0A9QX36_ARUDO; Uncharacterized protein
STRINGTraes_2BL_CF47A74CC.21e-121(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972