PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03879.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 323aa MW: 34410.4 Da PI: 4.7198

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03879.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	33	89	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s+ Zmw_sc03879.1.g00070.1.am.mk 33 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRSK 89 68***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	16	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.77	33	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MLSSHHEAMM PYAPLPPSLL VDRRYKQGAE VAPNCPRCDS PNTKFCYYNN YSLSQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKSRRSKS SVRSTAVSIS GGRDAAFGNQ FPGPVRPDLV 120 LESMVSNPAN PGQAMPDVSS SGDGSSIDLA MLYAKFLNNP PADASVGAVT PESAGKMDKA 180 FDTFSVSSDL SPSVLAPGAQ LDPCHDGFGE WSGPVSSSDP NSTTSTTATT TMLCADVSVQ 240 AALGELNFAM DQSCFDSIGL PADVDNLSSW CSIVPSLSTL EDTKYDSLVS FPDDALSLHE 300 GMMNGPHHDW SVDCQGLEAL YMP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819046.1	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A2T7DDY7	0.0	A0A2T7DDY7_9POAL; Uncharacterized protein
STRING	Si002230m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83