PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03861.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 710aa MW: 75155.7 Da PI: 10.4084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03861.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.3e-14	256	302	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+a +K +Ka+ L ++ +++k+L Zmw_sc03861.1.g00080.1.am.mk 256 RSHSEAERRRRQRINGHLAKLRSLLPNA-----TKTDKASLLAEVLDHVKEL 302 78************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.672	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-11	256	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.28E-13	256	305	No hit	No description
SuperFamily	SSF47459	2.88E-14	257	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-14	257	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	6.41E-5	348	395	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.5E-6	348	395	No hit	No description
CDD	cd04873	5.55E-7	348	391	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MLRSPCMTQS SGRASGLGAR GGNNCVRSGA ADEAHAPDKR PRSLYGTVLC GSGGTPEPGY 60 LFPLTARQGR VARLCRAGSG TTAAPMDHGF MVPEGVAATS IVVLKRRRPF DREREQLEAT 120 TGSTPPPTTS LSSRAQGRQP GMWDGGVEHG SQEAAHHPLL GQPWLGAAPF SEPDVRVFEA 180 AGAGYACDVF GGLGHGGDGI FGFGFDAMPQ QRRPRQHDPQ IGKAVVSGGL LGSLQAELGR 240 MAARDMMDAK ALAASRSHSE AERRRRQRIN GHLAKLRSLL PNATKTDKAS LLAEVLDHVK 300 ELKRQTSAMM VANDEEASGT AQPLPTEADE LAVDAAVGSD GRLLARASLC CKDRPDLIPD 360 IVRALAALGM RARRAEITTL GGRVRSVLLI TADEGTGGDG DGQDDDRPIA LHDDDERTAS 420 HRRHECVTSV QEALRGVMDR RAACSDTSSP GGGGSIKRQR MNYAAQRQCS LESLSIGAGF 480 GGPRLPRTFR DHEGLGRRRH RSSVGSIGAG LRGRGPPLPP LPMAGSGRAR DPAVGGPSPS 540 PPGRALRAEP VGRTLARIVG VGPVARSPPP QKPDPHDLHG VTKTCARPAA GPGSHRHIEQ 600 FWQQRAGSKW TKLEQVEGKT DQREDSSPRQ ICQQFDCGAL ARCRQACRSA LAGPEPGNTG 660 PSLRTQVVVS SPTRRISPRP YAAAAAGDLA FPFPFRKGGE LSRARLGDLK

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MLRSPCMTQS SGRASGLGAR GGNNCVRSGA ADEAHAPDKR PRSLYGTVLC GSGGTPEPGY  60
LFPLTARQGR VARLCRAGSG TTAAPMDHGF MVPEGVAATS IVVLKRRRPF DREREQLEAT  120
TGSTPPPTTS LSSRAQGRQP GMWDGGVEHG SQEAAHHPLL GQPWLGAAPF SEPDVRVFEA  180
AGAGYACDVF GGLGHGGDGI FGFGFDAMPQ QRRPRQHDPQ IGKAVVSGGL LGSLQAELGR  240
MAARDMMDAK ALAASRSHSE AERRRRQRIN GHLAKLRSLL PNATKTDKAS LLAEVLDHVK  300
ELKRQTSAMM VANDEEASGT AQPLPTEADE LAVDAAVGSD GRLLARASLC CKDRPDLIPD  360
IVRALAALGM RARRAEITTL GGRVRSVLLI TADEGTGGDG DGQDDDRPIA LHDDDERTAS  420
HRRHECVTSV QEALRGVMDR RAACSDTSSP GGGGSIKRQR MNYAAQRQCS LESLSIGAGF  480
GGPRLPRTFR DHEGLGRRRH RSSVGSIGAG LRGRGPPLPP LPMAGSGRAR DPAVGGPSPS  540
PPGRALRAEP VGRTLARIVG VGPVARSPPP QKPDPHDLHG VTKTCARPAA GPGSHRHIEQ  600
FWQQRAGSKW TKLEQVEGKT DQREDSSPRQ ICQQFDCGAL ARCRQACRSA LAGPEPGNTG  660
PSLRTQVVVS SPTRRISPRP YAAAAAGDLA FPFPFRKGGE LSRARLGDLK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98