PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03854.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1526aa MW: 161516 Da PI: 9.8564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03854.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.3e-06	1311	1372	12	55
HHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a + +Ka++L + ++Y+k Lq Zmw_sc03854.1.g00060.1.am.mk 1311 RRERIAERMKSLQELVPNANkvgnplpchalsssfvriVVAALPTDKASMLDEIIDYVKFLQ 1372 9***************888*************777789***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.471	1299	1371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-7	1311	1392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-4	1311	1376	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-9	1312	1380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1526 aa Download sequence Send to blast
MGWVYGGACY LIPLVNGEVE YESAHTLVEH AAVWNVDRGV TTVTDSDTVV ARDPRWIMDT 60 TGTRVAHDEC TIRTPAFRHR VKNLRILTPV GDEDSVISST PRYVGLELSQ SVRRSKIRPH 120 AILLAVGSLF TNSRRGRRNI YYTPGQYTSR LGPSRARDSE LMCRAVTRSA PESRRRAHVK 180 REGAHESCGF LVRRPRSQTD RSLDPAPGGR QQSSVGRPGA GGDRESDLTA KCTAPEPATL 240 CYDETHGASA PWTMPCLCLP GYPAAYSNVP ARKFPSLLCP PALASGTARI HSSIPRAEGK 300 NGSAALYQYL PLLPFSSLPA GPDQHGLLAA AVNPRPAPGS GHRGPSPLVP VPPRSLPRLP 360 DGVEWLLPLP PTPSPPSPPP ISTSGVAGAR GVPENSNSQS CVRGRAGGGG AEAGALPLPP 420 PPRMAAVSSS SAAAAATIRA HLARTGSGAD CQASPRSLLS RILLRGGDGG SSGGVFGCRV 480 RLPRRYGSGG SKDGGASEQG DTPRVKVVER APPDMPIETP RSSLGAGRRK PEEELVSMNL 540 GLGASLVLLL SKSAVELNKM VELRAQMEAL VAEIRHAAQR KMEEKQAAPA MARASYSHQE 600 SNGSSATTTV VKDPIVFPAA DADAASNCSR TTDTALSARG GGGGGVVVDP MEAELQAELN 660 RMQRRTVHGP NAPVQGLELR LPKVKTKGNA VRDSPSRSCV DDGDEPEDDA GEDDAESDEE 720 RCEDKSPPHG GVSARALERR LHELLQKRQQ ERIVELEAAL DAAQRRVHEK EREAARWRDA 780 AKLVSHRRDE SRRTVVRWRE RARAQVAGSG AKKTGSQWHV PFVHPSAACQ FHWDRHAAQV 840 TRFKCCPLLG LRARLCTLAL VQTQEVSARA PVWRQQKRQG IQWRWCHEFA AGIHRAIARG 900 QNGDGKNGKG QPRRLRCTSA AAAVTRGNTT RQAPGPFHPA VPPAGPLHEY GTHGKPIKRY 960 YAVDSAPFLC ASRGPPPSRS HYYLQLCKRN VSQLMRTADF FAPASQPASP PLVHSSFLSV 1020 MGDREFGTGS SCAFLSPLFF DYVGRSVADR RAELSRRIPP RHQPVSSPAQ QPQSSIAMQP 1080 SGRELAGGDG AGGAQADDFF DQMLSTLPSG WADLGGTGGK SPWELSAGAE EGHSAQAPFG 1140 DESALLASRL QQHQIGGDKS SSPVMLQLSD LHRNNGLAGG AGEDGGFSPL ALFTDRSAPA 1200 REEMEGGFKS PNASGGDHAV FNGFGMHGAA AAVQQQFGQQ SLGGPAASSG GAPTGATSSA 1260 GGGAAPPRQQ RVRARRGQAT DPHSIAERVY HIAALLLVER LVKFSFKISL RRERIAERMK 1320 SLQELVPNAN KVGNPLPCHA LSSSFVRIVV AALPTDKASM LDEIIDYVKF LQLQVKVLSM 1380 SRLGGAAGMA PLVASMSSEG NSNGSSISNK GNSPATNGGT GTGENGGGLR VTEHRVAKMM 1440 EEDMGTAMQY LQGKGLCLMP ISLASAISSA TSSASLLSRP PARHQPPHDG SGAAAAAMSS 1500 PASAPNGAGG GDDARPVTDG AAKPQQ

Sequence ? help Back to Top

Protein Sequence Length: 1526 aa Download sequence Send to blast

MGWVYGGACY LIPLVNGEVE YESAHTLVEH AAVWNVDRGV TTVTDSDTVV ARDPRWIMDT  60
TGTRVAHDEC TIRTPAFRHR VKNLRILTPV GDEDSVISST PRYVGLELSQ SVRRSKIRPH  120
AILLAVGSLF TNSRRGRRNI YYTPGQYTSR LGPSRARDSE LMCRAVTRSA PESRRRAHVK  180
REGAHESCGF LVRRPRSQTD RSLDPAPGGR QQSSVGRPGA GGDRESDLTA KCTAPEPATL  240
CYDETHGASA PWTMPCLCLP GYPAAYSNVP ARKFPSLLCP PALASGTARI HSSIPRAEGK  300
NGSAALYQYL PLLPFSSLPA GPDQHGLLAA AVNPRPAPGS GHRGPSPLVP VPPRSLPRLP  360
DGVEWLLPLP PTPSPPSPPP ISTSGVAGAR GVPENSNSQS CVRGRAGGGG AEAGALPLPP  420
PPRMAAVSSS SAAAAATIRA HLARTGSGAD CQASPRSLLS RILLRGGDGG SSGGVFGCRV  480
RLPRRYGSGG SKDGGASEQG DTPRVKVVER APPDMPIETP RSSLGAGRRK PEEELVSMNL  540
GLGASLVLLL SKSAVELNKM VELRAQMEAL VAEIRHAAQR KMEEKQAAPA MARASYSHQE  600
SNGSSATTTV VKDPIVFPAA DADAASNCSR TTDTALSARG GGGGGVVVDP MEAELQAELN  660
RMQRRTVHGP NAPVQGLELR LPKVKTKGNA VRDSPSRSCV DDGDEPEDDA GEDDAESDEE  720
RCEDKSPPHG GVSARALERR LHELLQKRQQ ERIVELEAAL DAAQRRVHEK EREAARWRDA  780
AKLVSHRRDE SRRTVVRWRE RARAQVAGSG AKKTGSQWHV PFVHPSAACQ FHWDRHAAQV  840
TRFKCCPLLG LRARLCTLAL VQTQEVSARA PVWRQQKRQG IQWRWCHEFA AGIHRAIARG  900
QNGDGKNGKG QPRRLRCTSA AAAVTRGNTT RQAPGPFHPA VPPAGPLHEY GTHGKPIKRY  960
YAVDSAPFLC ASRGPPPSRS HYYLQLCKRN VSQLMRTADF FAPASQPASP PLVHSSFLSV  1020
MGDREFGTGS SCAFLSPLFF DYVGRSVADR RAELSRRIPP RHQPVSSPAQ QPQSSIAMQP  1080
SGRELAGGDG AGGAQADDFF DQMLSTLPSG WADLGGTGGK SPWELSAGAE EGHSAQAPFG  1140
DESALLASRL QQHQIGGDKS SSPVMLQLSD LHRNNGLAGG AGEDGGFSPL ALFTDRSAPA  1200
REEMEGGFKS PNASGGDHAV FNGFGMHGAA AAVQQQFGQQ SLGGPAASSG GAPTGATSSA  1260
GGGAAPPRQQ RVRARRGQAT DPHSIAERVY HIAALLLVER LVKFSFKISL RRERIAERMK  1320
SLQELVPNAN KVGNPLPCHA LSSSFVRIVV AALPTDKASM LDEIIDYVKF LQLQVKVLSM  1380
SRLGGAAGMA PLVASMSSEG NSNGSSISNK GNSPATNGGT GTGENGGGLR VTEHRVAKMM  1440
EEDMGTAMQY LQGKGLCLMP ISLASAISSA TSSASLLSRP PARHQPPHDG SGAAAAAMSS  1500
PASAPNGAGG GDDARPVTDG AAKPQQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4882	2	2