PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03834.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 636aa MW: 70237.5 Da PI: 7.3106

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03834.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.6	6.7e-112	263	634	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d + a++lL++++++asp+gd +qRla++f+e+L+arla+++s +y++l +++ts + l+a+ Zmw_sc03834.1.g00010.1.am.mk 263 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDGTQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVALLQAY 340 6789**********************************************************999998...899* PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +l+ + + k++++ N +I++a g++++Hi+D++i++G+QWp++l+ +++R++gpp++RiTg++ p++g +e++ee Zmw_sc03834.1.g00010.1.am.mk 341 QLYMAAICFKKMAFIFSNYTIYNASLGKKKIHIVDYGIQYGFQWPCFLRRISCREGGPPEVRITGIDLPQPGfrPTERIEE 421 *******************************************************************9***** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rL ++A+e+gvpf++++++a+++e+++ e+L ++p+E+l+Vn+++q +l+desv +es+rd vL+ +++++P+ +++ Zmw_sc03834.1.g00010.1.am.mk 422 TGRRLGNYAREFGVPFKYHAIAASKMESIRKEDLTIDPDEVLIVNCMYQFRNLMDESVVIESPRDVVLNNIRKMQPHAFIH 502 ***************************************************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr + nv+aceg++r+er et+++W+ r ++a Zmw_sc03834.1.g00010.1.am.mk 503 AIVNGSFSAPFFVTRFREALFYYSALFDILDTTTPRNSDQRMLIEQNIFGRTALNVIACEGTDRVERPETYKQWQVRNQRA 583 ***************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 G+k++pl++++++ +++ ++ ++ + + ++ ++++l++gWk+r L+++S W Zmw_sc03834.1.g00010.1.am.mk 584 GLKQLPLNQEIVQVVRSKVKDCYHKDFVIDVDHNWLLQGWKGRILYAISTW 634 *******************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.143	237	615	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-109	263	634	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
TRVFPPSSNL PLPCLQSLLP SRLPASRSRP GDLNSSFPLP PPSPHAAAAM GSSFYDPSPA 60 GAADPSLYFY LPDLVPDSPS SYLDLPPTTH HQQPPVSSDG GGGNGATGSP EDLVLPYISR 120 MLMEDDIEDK FFYDYPDNPA LLQAQQPFLD ILSNSDDSSA TTGDKVAARS DGPFAPAPPP 180 PSAASVKEEG LVNAAPGAGV SRGRKNPYDD DELEAESGRS SKQSAQMQQL RIAMQEEAAK 240 NEAGGKAGNG KANGRGGRKV VDLRTLLIHC AQAVATDDRR SATELLKQIK QHASPQGDGT 300 QRLAHCFAEG LQARLAGTGS MVYQSLMAKR TSAVALLQAY QLYMAAICFK KMAFIFSNYT 360 IYNASLGKKK IHIVDYGIQY GFQWPCFLRR ISCREGGPPE VRITGIDLPQ PGFRPTERIE 420 ETGRRLGNYA REFGVPFKYH AIAASKMESI RKEDLTIDPD EVLIVNCMYQ FRNLMDESVV 480 IESPRDVVLN NIRKMQPHAF IHAIVNGSFS APFFVTRFRE ALFYYSALFD ILDTTTPRNS 540 DQRMLIEQNI FGRTALNVIA CEGTDRVERP ETYKQWQVRN QRAGLKQLPL NQEIVQVVRS 600 KVKDCYHKDF VIDVDHNWLL QGWKGRILYA ISTWGG

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

TRVFPPSSNL PLPCLQSLLP SRLPASRSRP GDLNSSFPLP PPSPHAAAAM GSSFYDPSPA  60
GAADPSLYFY LPDLVPDSPS SYLDLPPTTH HQQPPVSSDG GGGNGATGSP EDLVLPYISR  120
MLMEDDIEDK FFYDYPDNPA LLQAQQPFLD ILSNSDDSSA TTGDKVAARS DGPFAPAPPP  180
PSAASVKEEG LVNAAPGAGV SRGRKNPYDD DELEAESGRS SKQSAQMQQL RIAMQEEAAK  240
NEAGGKAGNG KANGRGGRKV VDLRTLLIHC AQAVATDDRR SATELLKQIK QHASPQGDGT  300
QRLAHCFAEG LQARLAGTGS MVYQSLMAKR TSAVALLQAY QLYMAAICFK KMAFIFSNYT  360
IYNASLGKKK IHIVDYGIQY GFQWPCFLRR ISCREGGPPE VRITGIDLPQ PGFRPTERIE  420
ETGRRLGNYA REFGVPFKYH AIAASKMESI RKEDLTIDPD EVLIVNCMYQ FRNLMDESVV  480
IESPRDVVLN NIRKMQPHAF IHAIVNGSFS APFFVTRFRE ALFYYSALFD ILDTTTPRNS  540
DQRMLIEQNI FGRTALNVIA CEGTDRVERP ETYKQWQVRN QRAGLKQLPL NQEIVQVVRS  600
KVKDCYHKDF VIDVDHNWLL QGWKGRILYA ISTWGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-45	267	634	8	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664663.2	0.0	PREDICTED: scarecrow-like protein 9, partial
Swissprot	O80933	1e-161	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A287QL73	0.0	A0A287QL73_HORVV; Uncharacterized protein
STRING	OBART12G16530.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297