PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03810.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 555aa    MW: 59453.1 Da    PI: 9.7954
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03810.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.11.1e-18309353145
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                                   kri ++ +rqv fskR+ g++KKA+ LS LC+a vav+ fs+ gk
  Zmw_sc03810.1.g00070.1.am.mk 309 KRIASEEKRQVCFSKRKDGLFKKASDLSALCGAHVAVVAFSPGGK 353
                                   79****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.193301361IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-26301371IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29301360IPR002100Transcription factor, MADS-box
CDDcd002654.96E-32302377No hitNo description
PRINTSPR004048.7E-17303323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-23310357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-17323338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-17338359IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAADFSPREE FPSYTRKTRP TSRRHALCPF ASSGSHHFRI SPSRCSLLPA MVSLHCSALP  60
LFIKTSHSSP ANPTTRIHIS TAPPSAPSRF LASSVPSWTV ASRARPSAAT TTITDDSSAP  120
ARSRGFGTPG SSPAPSSVPA PPTPPPVSAA GAAEQSVVPR FLGTGGGWGP RRYPLRRRIA  180
AARCVAFLPP PSQDAAEFLA SLASHPSHAC IVPITKSLEF VLINHSNSQK IFLIPAIHFH  240
ACVSPALYKH SKPPPAVHSL SLERYYLSLH LDMASRDHSD VSLEAAPAAV MTIERKRKKT  300
MGRQKIEIKR IASEEKRQVC FSKRKDGLFK KASDLSALCG AHVAVVAFSP GGKPFSFGHP  360
SVDALVGRFT DPAAPGAMGP APVHSALLKE FSREEEFLAK ALAAEASRKK ALEAAICQAG  420
VWTGDADVKS ASPNDVLAMR SALERVQAEV AERLQEFMAE EAMMQLTASA GLFVADGGVS  480
SHHRDQVVMD EQKMMAMGGN VDHALPFAAM MLPLPPYDHC FDLNHGPVFE HTILQPGRRA  540
NYDQPMSSSP AASKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-14301375175MEF2 CHIMERA
6byy_B4e-14301375175MEF2 CHIMERA
6byy_C4e-14301375175MEF2 CHIMERA
6byy_D4e-14301375175MEF2 CHIMERA
6bz1_A3e-14301395192MEF2 CHIMERA
6bz1_B3e-14301395192MEF2 CHIMERA
6bz1_C3e-14301395192MEF2 CHIMERA
6bz1_D3e-14301395192MEF2 CHIMERA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294298RKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432