PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03797.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 451aa    MW: 49379.9 Da    PI: 9.5152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03797.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.7e-10161206154
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                     s+y+GV++++++grW+++I+d      + k+ +lg   ta +  +a+++a+ k++
  Zmw_sc03797.1.g00040.1.sm.mkhc 161 SQYRGVTFYRRTGRWESHIWD------CgKQLNLG---TASMICRAYDRAAIKFR 206
                                     78*******************......55****88...66667777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-8161216IPR016177DNA-binding domain
PROSITE profilePS5103211.179162215IPR001471AP2/ERF domain
SMARTSM003801.4E-18162221IPR001471AP2/ERF domain
CDDcd000181.04E-14162217No hitNo description
Gene3DG3DSA:3.30.730.102.1E-9162216IPR001471AP2/ERF domain
CDDcd000182.91E-12250295No hitNo description
SuperFamilySSF541711.9E-6250294IPR016177DNA-binding domain
SMARTSM003804.2E-13251299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MELDLNVAEG APEKPPAAAR SDSGTSESSV LNAEASTAPA EEGSSSTPAP RAVLEFSILR  60
SSASAVGDSA GGGADEDDDS TPSPPRPLQA SPQLVTRELF PAAAGPARPG PSHWSELRFF  120
RAEPPRVQPD IRIQHAPPPA PPPVQPQAPK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQLNLGT ASMICRAYDR AAIKFRGVDA DINFNLSDYE DDMKQMKSLS KEEFVHVLRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA IKCNGREAVT NFEPSTYDGE  300
LLTEVSVEGA DVDLNLSISQ PSSQSPKRDK NSLGLQLQHG SSDGSEFKRA KACAKLMLPP  360
NRLVALIECI KRPYQEARGE HAQLGMEGDH NHASFHPAIA AVLIVFVVRC SIIRILQHRC  420
PFRHPIGHPP VRPIVVVVFE PPPPIIKKKN L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.11e-152ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-143AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0N7BW921e-159A0A0N7BW92_DENLA; Transcription factor AP2
STRINGTraes_1BS_E68807072.21e-149(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935