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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03797.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 116aa MW: 12452.1 Da PI: 7.5039 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.8 | 1.2e-08 | 89 | 110 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+ + +Lk+H+++H Zmw_sc03797.1.g00020.1.sm.mkhc 89 ECEKCGKRFKKPAHLKQHMQSH 110 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.46E-8 | 41 | 110 | No hit | No description |
SMART | SM00355 | 18 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0016 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.424 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-7 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 5.7E-6 | 89 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MGGRAGGPVA GGEEESGCGD GMAGTTVATA GATPDPVRDV RRYKCEFCGV VRSKKSLIHA 60 HVLEHHKDEV DGVEAYQGCG VPSKELIQEC EKCGKRFKKP AHLKQHMQSH SLETTY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 3e-33 | transcription factor IIIA isoform X1 | ||||
TrEMBL | A0A2T7E7G6 | 8e-33 | A0A2T7E7G6_9POAL; Uncharacterized protein | ||||
STRING | BRADI2G37790.1 | 1e-32 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |