PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03775.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 953aa    MW: 103254 Da    PI: 9.4687
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03775.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-1781123143
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                                   kri ++ +rqv fskR+ g++KKA+ LS LC+a vav+ fs+ 
  Zmw_sc03775.1.g00070.1.am.mk  81 KRIASEEKRQVCFSKRKDGLFKKASDLSALCGAHVAVVAFSPG 123
                                   79**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-2873132IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-2573143IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.50773133IPR002100Transcription factor, MADS-box
CDDcd002656.55E-3074149No hitNo description
PRINTSPR004043.1E-157595IPR002100Transcription factor, MADS-box
PfamPF003193.6E-2282129IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-1595110IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-15110131IPR002100Transcription factor, MADS-box
TIGRFAMsTIGR007568.2E-4541571IPR002885Pentatricopeptide repeat
PfamPF015350.12543568IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013571599IPR002885Pentatricopeptide repeat
PfamPF015350.0032571598IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MVKSEEGQSW AGATRRKTMM AMSKPPPAVH SLSLERYYLS LHLDMASRDH SDVSLEAAPA  60
AVMTIERKRK KTMGRQKIEI KRIASEEKRQ VCFSKRKDGL FKKASDLSAL CGAHVAVVAF  120
SPGAKPFSFG HPSVDALVGR FTDPAAPGAM GPAPVHSALL EEFSREEEFL AKALAAEASR  180
KKALEAAICQ AGVWTGDADV KSASPNDVLA MRSALERVQA EVAERLQEFM AEEAMMQLTA  240
NAGLFVADGG VSSHHRDQVV MDEQKMVAMG GNVDHALPFA AMMLPLPPYD HCFDLNHGPV  300
FEQLSVGGAC VVPGCEAGAA EDGARRSSGV EAVADAARGI RFRLPRARPR ALHLTSDTAS  360
TFARRRSVSR SAAVKFVRCT RFARELLTRC HCHVHGAAAA AFCLPSGVGG VQRPFPPPPP  420
APATTPPAHL PPRPASRLAR NPFVASRLLI ASYRLSLPFS LFLLSSLPAS ALSPFSFNSV  480
IRASPPRIAL RLFDQMRRRG VSPDPYTLPF LIHACSGSDP PLCQSLHGHG FRLGYGSHLF  540
TQTALINMYF ACGSVVAARR VFDEMPVRDV VAWTGMVSGY VDSRMYLKSV EMFQQMRSAD  600
DLVRPNVATV VSVASACAGL GSLEYAKGLH AYVKKVGLEG ELIIRNALID MYNKCGSIES  660
AAVLRDDKKT VLRCRDETAV VQSRKENGEL RAWASCPPCE SKVWHPPYKE WCRLGAIWRH  720
LDAQSCESDA RGPELELRER ERDLPPPPSS SHLPPLSPSS AAKSKLTAAA FVGTMVASAH  780
GSCYVVLVAA AVAARQGRGT LGEEGWGVRI EVGDDAGAWT TNNQLWPVVS KLLCALVVSG  840
TRGIRTQCTG YVALLAYPVH LSRPLRFLCF DISRDLLSAP SFGLSPSSHL RFRARRIRTD  900
RVSLRGPSSC DEPHAARLLL LPGAYSLAFA ATRLACGWSR FAGWCWPPVA RGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-364636674330PLS9-PPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670RKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432