PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03752.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 573aa MW: 61761.9 Da PI: 10.1361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03752.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Zmw_sc03752.1.g00040.1.am.mk 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	12.3	0.00051	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Zmw_sc03752.1.g00040.1.am.mk 95 HECPYCYRVFSSGQALGGHKRSH 117 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	4	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0078	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.3E-8	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.4E-4	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.3E-8	90	117	No hit	No description
PROSITE profile	PS50157	9.39	95	117	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.0E-12	95	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSLAA SAAAAAAAAA EAAAAKQQIS SASSANVRGG 60 RGGCCAPPVA PPPPPPQPQT PSPLPEQQHG DEAPHECPYC YRVFSSGQAL GGHKRSHVCG 120 AAAAAAAQQA APPSPIKNPG MIDLNVEPPS EEVELSAVSD PHFNPAASSG TCMRRSFYCC 180 HGQWLVSRSC LLACLALGQL GRDRQCVSWG SLCGAPPEAD RAGETVGTRV RAWRVLMTVA 240 KGRLPRRGRQ ILIGRTDCDG DTQLGILAAS LSAVRSSSSS TFVTIRSRRY CEKKIGPHPC 300 LHVSSVAVLV LVARHHSCPF PHTRNDQRIL GSAVHGAAGR QQHAAVLFLP MMVVAWHAPC 360 VRAWRLTDPI RRPTHRFVVA RSLAPKLDHH MVGGEQAKPT YSYYARTLAF KPAVTRGEER 420 RGCKPESGEE KYPRSNESML MATMGTRDAC SEKKSVGLGL AGWGLGLEKK LTRRPPPAEQ 480 DVPVLPYLHR SLAIHPFIGY VVQLYTATLP FNVWYATRQR MWSAACLHDA AAVFSCGYRA 540 SHARLRVPPV PLEQKHKSDW IFSSSRSIVK GTG

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MAKNTCKLCS RRFASPRALA GHMRSHSLAA SAAAAAAAAA EAAAAKQQIS SASSANVRGG  60
RGGCCAPPVA PPPPPPQPQT PSPLPEQQHG DEAPHECPYC YRVFSSGQAL GGHKRSHVCG  120
AAAAAAAQQA APPSPIKNPG MIDLNVEPPS EEVELSAVSD PHFNPAASSG TCMRRSFYCC  180
HGQWLVSRSC LLACLALGQL GRDRQCVSWG SLCGAPPEAD RAGETVGTRV RAWRVLMTVA  240
KGRLPRRGRQ ILIGRTDCDG DTQLGILAAS LSAVRSSSSS TFVTIRSRRY CEKKIGPHPC  300
LHVSSVAVLV LVARHHSCPF PHTRNDQRIL GSAVHGAAGR QQHAAVLFLP MMVVAWHAPC  360
VRAWRLTDPI RRPTHRFVVA RSLAPKLDHH MVGGEQAKPT YSYYARTLAF KPAVTRGEER  420
RGCKPESGEE KYPRSNESML MATMGTRDAC SEKKSVGLGL AGWGLGLEKK LTRRPPPAEQ  480
DVPVLPYLHR SLAIHPFIGY VVQLYTATLP FNVWYATRQR MWSAACLHDA AAVFSCGYRA  540
SHARLRVPPV PLEQKHKSDW IFSSSRSIVK GTG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77