PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03683.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 633aa    MW: 69453.4 Da    PI: 8.6452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03683.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-14478522347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Zmw_sc03683.1.g00040.1.am.mk 478 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 522
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0024365417IPR001005SANT/Myb domain
PROSITE profilePS500905.993367415IPR017877Myb-like domain
SuperFamilySSF466891.51E-9367422IPR009057Homeodomain-like
CDDcd001671.14E-4369411No hitNo description
PROSITE profilePS5129417.568471527IPR017930Myb domain
SuperFamilySSF466893.95E-17473527IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-17474525IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.5E-12475521IPR009057Homeodomain-like
SMARTSM007175.8E-13475525IPR001005SANT/Myb domain
PfamPF002491.9E-11478522IPR001005SANT/Myb domain
CDDcd001679.41E-11478523No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MVELEFFLPF RGLNTDCDAE MMPPRTIRTS ERWQRIGGVQ GAFVHPSGWP CPSSRSATWS  60
GRDGAEAQMS LSSSSFSWGC KSRECRGVIF GCEDGSPGRK ALEIGEVGLR EEADGLLLGR  120
GLPGFPLRSK TSGWLLVRSC DGGIAERPGR KGCALFIWRH LFVAPKSKLL AFGSMPRGGH  180
CCHCAQHRAG VGYRTEAANF EQHGTGLGLD DRLKRDPNPA RVGRNKSSLG GRVVPGATDL  240
MGTRVLGPGR PAQLPLPLRF NDSGESGHVL PRNRQSTPHT TPDHEGDPDS CTRLKLYYHH  300
RLVHKYPFFP SAPTLSPASG LARRTRLPFA PTGKESWMEV LPSPPATRFA AQAAGGWFLQ  360
DRQPVPGVWT LEENKRFERA LASVDWDAPD RWECVASMLP GRTVADVVSH FDDLENDVHF  420
IEAGLMPLPH YGAGDDSQSA AGFTFDWDAG DLGFKRSCYV VGGKRGRGQD QERKKGVPWT  480
EEEHKLFLMG LKKYGRGDWR NISRNFVTSR TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD  540
ITTVNLPDED SSNPSPSPPS VLTATSTPSS GGTVMSEQFG VIMDSKPPPP PMGQHNHFLP  600
HPYGNVKLEP HHGGLFDDSV LMQMQCGQLQ PLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-133694311173RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796