PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Zmw_sc03668.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 626aa MW: 68313.6 Da PI: 8.0452

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03668.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.1	5.5e-17	489	543	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Le+ F++++ +s +++ eLA++++Lt rqV vWFqNrRa+ k Zmw_sc03668.1.g00100.1.am.mk 489 RKKLQLSKEQATLLEDTFRSHNILSYAQKHELARRVNLTPRQVEVWFQNRRARTK 543 678899***********************************************98 PP
2	HD-ZIP_I/II	105.8	3.4e-34	489	576	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk++lskeq++lLE++F++++ L+ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d e Lkr++++l+ en+rL+ Zmw_sc03668.1.g00100.1.am.mk 489 RKKLQLSKEQATLLEDTFRSHNILSYAQKHELARRVNLTPRQVEVWFQNRRARTKLKQTEVDREILKRCCESLTVENQRLK 569 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLr 88 +e L+ Zmw_sc03668.1.g00100.1.am.mk 570 HELVGLQ 576 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07059	1.6E-56	80	295	IPR009769	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Gene3D	G3DSA:1.10.10.60	6.7E-17	473	544	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.1E-17	481	546	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	485	545	IPR001356	Homeobox domain
SMART	SM00389	2.5E-12	487	549	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-14	489	543	IPR001356	Homeobox domain
CDD	cd00086	1.27E-13	489	546	No hit	No description
PROSITE pattern	PS00027	0	520	543	IPR017970	Homeobox, conserved site
SMART	SM00340	3.7E-10	545	589	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MLATSADEIT AKPGDCALRL RHSREADTPT TPPPRRGLAM CPTTPDRRGD SASGESSWRH 60 EAVSAGSLRK VDLDRGANGW ASPPGDLFHL RARGYFAAAG GXXXXXXXXL RPAGVDWLRS 120 HARLDHVLAR DDNPVAAAFR RARLRKDPAA HFLLAVNLQV PGRPDAYSAV FYFAAEAPIP 180 ADSLLGRFVH GDDAYRNARF KIVNRIVKGP WLVRATVGNY AACLLGRALT CRYHKGDDYL 240 EIDVDIGSSA IASAILHLAL GAVTSVTIDM GFLVESQSEE ELPERLFGAV RIAQMEMGAA 300 KYVESSPDEA ASETAGKAAA GFRVGSAKVA NHSCQQEHAG GKVGRSMSCQ ERQSGGASLS 360 PSHSLHHLQH PFREQPSVSF FRCCFWEGSQ QARLNPLIDS MSYSPSCMEE EDLRAWLGLG 420 IGGGGEGGCS PSRSHGERWS SVQFDKQDEM SGCGYEQAEN KKSDNKGRTR KRCPSPSEEE 480 DDGGDGGARK KLQLSKEQAT LLEDTFRSHN ILSYAQKHEL ARRVNLTPRQ VEVWFQNRRA 540 RTKLKQTEVD REILKRCCES LTVENQRLKH ELVGLQRSGA VAGLYVVDNQ FPRAAPADTV 600 SVCPSCEKVT LTSVGDTSNK SSSYSS

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MLATSADEIT AKPGDCALRL RHSREADTPT TPPPRRGLAM CPTTPDRRGD SASGESSWRH  60
EAVSAGSLRK VDLDRGANGW ASPPGDLFHL RARGYFAAAG GXXXXXXXXL RPAGVDWLRS  120
HARLDHVLAR DDNPVAAAFR RARLRKDPAA HFLLAVNLQV PGRPDAYSAV FYFAAEAPIP  180
ADSLLGRFVH GDDAYRNARF KIVNRIVKGP WLVRATVGNY AACLLGRALT CRYHKGDDYL  240
EIDVDIGSSA IASAILHLAL GAVTSVTIDM GFLVESQSEE ELPERLFGAV RIAQMEMGAA  300
KYVESSPDEA ASETAGKAAA GFRVGSAKVA NHSCQQEHAG GKVGRSMSCQ ERQSGGASLS  360
PSHSLHHLQH PFREQPSVSF FRCCFWEGSQ QARLNPLIDS MSYSPSCMEE EDLRAWLGLG  420
IGGGGEGGCS PSRSHGERWS SVQFDKQDEM SGCGYEQAEN KKSDNKGRTR KRCPSPSEEE  480
DDGGDGGARK KLQLSKEQAT LLEDTFRSHN ILSYAQKHEL ARRVNLTPRQ VEVWFQNRRA  540
RTKLKQTEVD REILKRCCES LTVENQRLKH ELVGLQRSGA VAGLYVVDNQ FPRAAPADTV  600
SVCPSCEKVT LTSVGDTSNK SSSYSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	RRARLRK
2	139	146	RRARLRKD
3	537	545	RRARTKLKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813437.1	0.0	protein ENHANCED DISEASE RESISTANCE 2-like
TrEMBL	A0A0A9BM21	0.0	A0A0A9BM21_ARUDO; Uncharacterized protein
STRING	Pavir.Da00161.1.p	0.0	(Panicum virgatum)
STRING	Sb10g028670.1	0.0	(Sorghum bicolor)