PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03660.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33435.3 Da    PI: 5.5391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03660.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20135186256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+++g   r++lg+++t+ eAa+a+++a+ +++g+
  Zmw_sc03660.1.g00130.1.am.mk 135 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186
                                   8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32134194IPR001471AP2/ERF domain
PROSITE profilePS5103224.078135193IPR001471AP2/ERF domain
CDDcd000184.45E-32135194No hitNo description
SMARTSM003803.6E-39135199IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22135194IPR016177DNA-binding domain
PfamPF008471.9E-14135185IPR001471AP2/ERF domain
PRINTSPR003671.5E-13136147IPR001471AP2/ERF domain
PRINTSPR003671.5E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDFSGEIDDF WLQNICEQFH DGEACLPVPE VYSASSTVAH PIPAPQHDFQ YAVFMPQQQV  60
ALVDLTQGYG DATAAAALSA KPAAPLMIQF GGEPSPRPSL TISLPPTTHV WGADVAPLPV  120
HSAAAASVDV EDLRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTPV EAARAYDRAA  180
FRMRGAKAIL NFPNEVGSGG ADFLAPQQPA SRSHSSKRKL HDAHQPDDVE AETAAKSIKT  240
EAFTSPASSQ TSLSPATTMA STVTSSSSSE AEMFPISPSG WSWEQFESVF GSLSPLSPHP  300
GHMGFPEVTV N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28136199669ATERF1
3gcc_A6e-28136199669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.11e-110ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PMC11e-109A0A3L6PMC1_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G057386_P011e-105(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465