PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03652.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 237aa MW: 28332.9 Da PI: 9.1994 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.5 | 4.2e-19 | 15 | 79 | 1 | 64 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W +qe+++Li+ar ++e++ + ++++k+ We+v++ +rerg++r++ qCk+kw+nl +ryk+ Zmw_sc03652.1.g00170.1.sm.mkhc 15 QWGEQETRELIAARGKIEREAVTaRRSAKTMWEAVAAWLRERGYRRTADQCKCKWKNLVNRYKRQ 79 7*****************9887626799***********************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-15 | 14 | 79 | No hit | No description |
CDD | cd12203 | 2.57E-15 | 14 | 78 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 16 | 73 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MEVGGVGGRD ERVPQWGEQE TRELIAARGK IEREAVTARR SAKTMWEAVA AWLRERGYRR 60 TADQCKCKWK NLVNRYKRQL LESETGATVK KKLKRPSGNQ TSEESDDEED CGEESEGDKP 120 MHDRKRRADD KKQQPRRISE KSRVGTSSIH DLLQDFLVQQ QRIDMQWREM TEKRAQERLL 180 FEQEWRQTMQ KLEQERLMLE RSWMEREEQR RMREEARAEK RDALLTTLLN KLLQEDL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448463.1 | 1e-106 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A059Q3B0 | 1e-112 | A0A059Q3B0_9POAL; Transcription factor | ||||
STRING | Pavir.J40572.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |