PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03647.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 911aa    MW: 98941.3 Da    PI: 8.67
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03647.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05241263123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zmw_sc03647.1.g00030.1.am.mk 241 FVCEICHKGFQRDQNLQLHRRGH 263
                                   89******************988 PP
2zf-C2H211.50.0009357375523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dCg++Fsr++++++H   +
  Zmw_sc03647.1.g00030.1.am.mk 357 DCGTVFSRRDSFVTHRAFC 375
                                   9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-6240263No hitNo description
Gene3DG3DSA:3.30.160.601.5E-4240263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4315347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.38E-6322347No hitNo description
Gene3DG3DSA:3.40.50.18203.7E-36700813IPR029058Alpha/Beta hydrolase fold
PfamPF005611.0E-12701805IPR000073Alpha/beta hydrolase fold-1
SuperFamilySSF534741.69E-33701909IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18207.5E-15814909IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MDYEEKHVEL QLFILLPAPL RDRLILDSTG SRVAWAGHWS IIFSPRDKVA QPISAKNCSV  60
FCCRYWTHRP ATFRAVFGFR KNGVAGDSPA GRRRPTCPPL CRRSDAPKAW PPHCVRVRRY  120
ADGKDGRGSG HFSSPIKSRV RQAVNVDVHR RTAAAGVSTQ VEEELLQQRP QRRYRVIKPF  180
MGSPPAMGSG DDGDLQRITG TSEPLAAPPA AKKKRSLPGT PDPSAEVIAL SPKTLTATNR  240
FVCEICHKGF QRDQNLQLHR RGHNLPWKLR QRAGGVGPAD GGGGGPPRKR VYVCPEASCV  300
HHNPARALGD LTGIKKHYCR KHGEKKWKCE RCAKRYAVQS DWKAHAKVCG TREYKCDCGT  360
VFSRRDSFVT HRAFCDALAQ ENSKLVQPVN MAATVAYRLQ GNQAAHLHLE LQADDYLDAV  420
EDDFVTNTTS WSPQLQLLPV SEDVSNPLIL PSPLGMLSSL AARTVAPSPA AFPFSGSTNI  480
GAMGLNGPPV DPTVGFASAS MSATALLQKA AALGATTSSG FGPMLSPFGP VRDGFPSPVQ  540
TQLVGFDVGG GPFPGQYYRG GPMTRAIGLL MQGGLRAPDR PREDDKRVVD YMGVDDDQSL  600
DMDPFLREVM GLGLTRPRRC AQASTGAGRR DFCVSGFEGC LTSLDDAVFL DVSLLELDFS  660
NGWQGEPLIL VGHGKSSIDR AVSVSQRKIV AAVELVAPVK HFFLVHGLAH GAWCWYKVVA  720
PLRAAGHRVT ALDLAASGVH PARIEEVASF EDYSRPLLEA VAAATDGERL VLVGHSLGGL  780
TVALAMERFP RKIAAAGFLA ASMPCVGKHM SVTIEEDLEL AKLLARPGSQ YMEDPIMKDE  840
TLLTDGNYGA VKRVFVIAMA DSSMTEEMQR QMIELSPGAE VEEIAGADHM AMLSKPRELC  900
DVLIKIANKF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3stt_A3e-5470091013266Methylketone synthase I
3stt_B3e-5470091013266Methylketone synthase I
3stu_A3e-5470091013266Methylketone synthase 1
3stu_B3e-5470091013266Methylketone synthase 1
3stv_A3e-5470091013266Methylketone synthase 1
3stv_B3e-5470091013266Methylketone synthase 1
3stw_A3e-5470091013266Methylketone synthase 1
3stw_B3e-5470091013266Methylketone synthase 1
3sty_A3e-5470091013266Methylketone synthase 1
3sty_B3e-5470091013266Methylketone synthase 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534