![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03616.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 28978.4 Da PI: 4.592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 103 | 142 | 13 | 55 |
AP2 13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Zmw_sc03616.1.g00040.1.am.mk 103 GKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 142 9********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.098 | 69 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 102 | 152 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-24 | 102 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 103 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 103 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-23 | 103 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 276 aa Download sequence Send to blast |
MAAAINHPGT GEDMMRALEP FILDAPPAAP QMPSSFPSAG FHYMGVPGQT AQLSPAQMQF 60 IQAQLHLQRN PGLGPRAQPM KPASGAGAGS XXXXXXXXXX XXGKWVAEIR LPRNRTRLWL 120 GTFDTAEEAA LAYDQAAYRL RGDAARLNFP DNAASRAPLE PAVDAKLQTI CATIAAASSS 180 SKGGKGRVGA VPINMAPQAQ PMSPSRSSSD EEGSGSGSSD DDEAASSAAA AVAAVAPLAE 240 MGQLDFGEVP WDEAESFVLR KYPSYEIDWD ALLGSN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 103 | 150 | 24 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820073.1 | 1e-103 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A0A9FEZ5 | 1e-117 | A0A0A9FEZ5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa01600.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |