PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03609.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 230aa MW: 24205.1 Da PI: 9.6971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03609.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35	3.9e-11	55	109	47	101
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++lp +er +a+++++ eA r++dP yG++gv+ +lq++++ +++el ++++++ Zmw_sc03609.1.g00010.1.sm.mk 55 RSLPVHERGNAADTMATEAYRRVQDPAYGCAGVVVRLQEEIRAAQSELPRTQAQI 109 67899*******************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.5E-9	55	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSTSGASKGG SVRSQCRQPG HGQQAVRRVQ EPAQEVLPGL RSRSLLPGLG SPEIRSLPVH 60 ERGNAADTMA TEAYRRVQDP AYGCAGVVVR LQEEIRAAQS ELPRTQAQIA VHAASGRRAD 120 DGAAGAVPRR AGHRLLPPAC WNYAFTVVAP AEDTLSRYRS TTSRPQSSLT TGIVAGTSIW 180 NVSGEFAGPV HTENSFLAAR MASLIAQCTE DARSSGGSPE AAKIQSQPAP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27534	4	4