PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03597.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 1155aa    MW: 127627 Da    PI: 11.007
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03597.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-31404508199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   f+kv tpsdv+k++rlv+pk++ae++      g+ e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++
  Zmw_sc03597.1.g00070.1.am.mk 404 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldaAGN-EKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDA 483
                                   89****************************8444.57789***************************************** PP

                                   T-EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  77 gDfvvFkld.gr.sefelvvkvfrk 99 
                                   gD+v F +  g+  +++l++ ++r+
  Zmw_sc03597.1.g00070.1.am.mk 484 GDTVSFGRGvGEhARGRLFIDWRRR 508
                                   *******655888999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-39398512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28401509IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-24402489No hitNo description
PROSITE profilePS5086314.466404509IPR003340B3 DNA binding domain
PfamPF023629.2E-28404508IPR003340B3 DNA binding domain
SMARTSM010194.7E-21404509IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MESISYPEDA AAAGFCRKTP AVSIDGPRSM PARQRRRRLP LDCRSISRSW ASGWIGTQAD  60
SNRDTWIATN FFHVAAVGRG REEEAMRFPA HYGRRKLTAN FGQDEMRDIG EGQARSRAVR  120
GEEEDPGHPP PVRHGTTRLR DAGDRSEAAE LQRMRSLVTP CGSPRSDGAP PATRLYDRQY  180
SNRGDNIEID NGLWTKRITR STYRLMRRIR EQQQLRQWRQ ICAPLPCRST DRGEVQMGRV  240
KWEEQAAACC FLFSLMTLTC VATDGSREVM QTAPSSLLPL ATQLELVQWK ERKAARTGCS  300
AALRFASPSY RPSTFRRPGD TSKVRLLCIL RPLLSGEGGR RAVKAAAALH PGRERGRREV  360
GGVGAAYMPR PQLDHHLAMT TELTAGPIRS GACGIDAVEK EHMFDKVVTP SDVGKLNRLV  420
IPKQHAEKYF PLDAAGNEKG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR  480
LDAGDTVSFG RGVGEHARGR LFIDWRRRPD PPAPYYQYRI PIPASVPLAP WAPHGIGGAR  540
TVLHHLPPSP STFYDSHHRR HDAYTPSGRL FYRPHQHQHQ QATVVLESVP VRIPTAPGHA  600
EPPSVASSGS KRLRLFGVNL DCAAGSEEEN GKSWRSAPPQ LPSSPRSSSS SSSGKASRRP  660
ERGSFQSTTR KFKRGGGGGR RLEEHLAICA SQSGLAFQAA KLLGDERRHV SFKCGRLGSK  720
RRPNHGLSSS LSRGQAVMGG LQLICRACQE RARTTDPSLW LAPIPRVRPL GEDRPSSECD  780
GGQGSGSSIK TAVVHRNLIY CAGLPSDQRL EARSGRIGEC YGEAVVAGVL LLIAKSADTS  840
PGWDGHLDGK RTDDLAALPA CLGRSTGAAH RNDSNKRSTG KNSGQKGCTM ETRERVWKKS  900
RSAEKNGGVR DTHGAFISGH DLIRDETTGT QDTDHTEPGA PTGVPKRQPP WDVWTMGLGL  960
LHRRRAGRGD QSAVRPLFHE ACRMRAAGLD EFRWVDTVPR QVGQLVSLVT ASNLASVERA  1020
NSAMKGTRHM AQAQLVSVET NRGRAWGAPA TWVGDAVPAL TAYCIIIQCP VACFLVQGYL  1080
WRIGQMRRAR GPTPNLSVRE QGKQSKAHGG KTERGRDRPR LQAKHGAPRF GSRFERESRG  1140
QPRRQGKRPA FFPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-573995093114B3 domain-containing transcription factor NGA1
5os9_B6e-573995093114B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4239433