PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03597.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 1155aa MW: 127627 Da PI: 11.007 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.9 | 6.5e-31 | 404 | 508 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+kv tpsdv+k++rlv+pk++ae++ g+ e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++ Zmw_sc03597.1.g00070.1.am.mk 404 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldaAGN-EKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDA 483 89****************************8444.57789***************************************** PP T-EEEEEE-.SS.SEE..EEEEE-S CS B3 77 gDfvvFkld.gr.sefelvvkvfrk 99 gD+v F + g+ +++l++ ++r+ Zmw_sc03597.1.g00070.1.am.mk 484 GDTVSFGRGvGEhARGRLFIDWRRR 508 *******655888999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 398 | 512 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-28 | 401 | 509 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-24 | 402 | 489 | No hit | No description |
PROSITE profile | PS50863 | 14.466 | 404 | 509 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-28 | 404 | 508 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-21 | 404 | 509 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1155 aa Download sequence Send to blast |
MESISYPEDA AAAGFCRKTP AVSIDGPRSM PARQRRRRLP LDCRSISRSW ASGWIGTQAD 60 SNRDTWIATN FFHVAAVGRG REEEAMRFPA HYGRRKLTAN FGQDEMRDIG EGQARSRAVR 120 GEEEDPGHPP PVRHGTTRLR DAGDRSEAAE LQRMRSLVTP CGSPRSDGAP PATRLYDRQY 180 SNRGDNIEID NGLWTKRITR STYRLMRRIR EQQQLRQWRQ ICAPLPCRST DRGEVQMGRV 240 KWEEQAAACC FLFSLMTLTC VATDGSREVM QTAPSSLLPL ATQLELVQWK ERKAARTGCS 300 AALRFASPSY RPSTFRRPGD TSKVRLLCIL RPLLSGEGGR RAVKAAAALH PGRERGRREV 360 GGVGAAYMPR PQLDHHLAMT TELTAGPIRS GACGIDAVEK EHMFDKVVTP SDVGKLNRLV 420 IPKQHAEKYF PLDAAGNEKG LLLSFEDRTG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR 480 LDAGDTVSFG RGVGEHARGR LFIDWRRRPD PPAPYYQYRI PIPASVPLAP WAPHGIGGAR 540 TVLHHLPPSP STFYDSHHRR HDAYTPSGRL FYRPHQHQHQ QATVVLESVP VRIPTAPGHA 600 EPPSVASSGS KRLRLFGVNL DCAAGSEEEN GKSWRSAPPQ LPSSPRSSSS SSSGKASRRP 660 ERGSFQSTTR KFKRGGGGGR RLEEHLAICA SQSGLAFQAA KLLGDERRHV SFKCGRLGSK 720 RRPNHGLSSS LSRGQAVMGG LQLICRACQE RARTTDPSLW LAPIPRVRPL GEDRPSSECD 780 GGQGSGSSIK TAVVHRNLIY CAGLPSDQRL EARSGRIGEC YGEAVVAGVL LLIAKSADTS 840 PGWDGHLDGK RTDDLAALPA CLGRSTGAAH RNDSNKRSTG KNSGQKGCTM ETRERVWKKS 900 RSAEKNGGVR DTHGAFISGH DLIRDETTGT QDTDHTEPGA PTGVPKRQPP WDVWTMGLGL 960 LHRRRAGRGD QSAVRPLFHE ACRMRAAGLD EFRWVDTVPR QVGQLVSLVT ASNLASVERA 1020 NSAMKGTRHM AQAQLVSVET NRGRAWGAPA TWVGDAVPAL TAYCIIIQCP VACFLVQGYL 1080 WRIGQMRRAR GPTPNLSVRE QGKQSKAHGG KTERGRDRPR LQAKHGAPRF GSRFERESRG 1140 QPRRQGKRPA FFPRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-57 | 399 | 509 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-57 | 399 | 509 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42394 | 3 | 3 |