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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03572.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 1247aa MW: 140331 Da PI: 6.2484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 271.6 | 2.4e-83 | 233 | 594 | 3 | 364 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 +lLl+cAeav++++ + a +lL++++++as +gd+ qRla++f ++L+arl++++++l + +++++ s ++e ++a++l Zmw_sc03572.1.g00090.1.am.mk 233 TLLLHCAEAVAANNRTVAGELLKQIKHNASATGDARQRLAQCFSKGLEARLLGTGNQLWSLVAAERPS---VVELAKAYRL 310 68*********************************************************999888888...9********* PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleet 161 ++ + k++++ ++I++a+ g++rvH++D+++++G++W+ L+ +a +R++ ++l+iT++g ++ s++ +ee Zmw_sc03572.1.g00090.1.am.mk 311 SMAACCFSKVAFIFSIKTIMDAAVGKSRVHVVDYGMNYGFHWAELICLMAkDRDGARAELKITAIGCSRRMfwSAQGIEEQ 391 **************************************************78889999********988879********* PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240 g+rL+k A+e+g+pf+f+ ++++++e++++++L+ + gE+l+Vn +++ ++l+des+ ++ +rd vL+ +++++P+v++ Zmw_sc03572.1.g00090.1.am.mk 392 GRRLRKCASEFGLPFKFHSITTTNWENVRIQDLNADIGEVLIVNDMYNFMTLMDESMLFDEpsPRDIVLSNIRNMRPDVFI 472 ********************************************************98776669***************99 PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 + +++ n++sFl rf eal yy+alfd ++a++pr+se r ++E+ellg+++ nvvaceg++ r e++++ ++r ++ Zmw_sc03572.1.g00090.1.am.mk 473 QSIVNSS-NGGSFLSRFREALFYYTALFDVFDATMPRQSESRLVLEQELLGNHLLNVVACEGRDLMGRPEKYRQCQARNQR 552 8877654.899********************************************************************** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 aG+k++pl+ ++k +k ++++++d +++ e+ ++l++gW+ Zmw_sc03572.1.g00090.1.am.mk 553 AGLKQLPLKPGIVKGIKEFVKTHHKD-FMLGEDGQWLLQGWMA 594 ************************77.**************85 PP | |||||||
2 | GRAS | 285.4 | 1.7e-87 | 881 | 1239 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 lLl+cAe v ++ ++ a++lL++++ +asp+gd++qRla+yf+eAL++rl++++ + + + + ++ ++ l+a Zmw_sc03572.1.g00090.1.am.mk 881 HALLLRCAETVMDDGHRGARELLEKIKRHASPTGDATQRLAHYFAEALETRLTGMGAHRS------SFTIQQPVRFLKA 953 579***************************************************544443......3333446799*** PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157 + l+ ++ + k++++ +N+ I++a++g +r+Hi+D+++ +G+QWp Ll+ La+R++gpp++ iTg++ ++ ++ Zmw_sc03572.1.g00090.1.am.mk 954 YPLYIATCCFNKVAFMFCNRSIYQAAAGRSRLHIVDYGVCHGFQWPVLLRWLAAREGGPPQVTITGIVLTKHWyrPSDH 1032 *********************************************************************666699**** PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvksl 234 +eetg+rL++ A+elgvpf+f++++a ++++++le+L+v+p+ alaVn+ ++l+ + d+sv ++ +rd vL ++++ Zmw_sc03572.1.g00090.1.am.mk 1033 IEETGHRLSNCARELGVPFKFQAIMAAKWDAVRLEDLNVDPDAALAVNSLFSLEMMDDDSVVVDRasPRDVVLGNIRRM 1111 *********************************************************99987766669*********** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 +P v+++ + + ++sFl+rf e+l +ysa+ se+r ++E +lg + n++aceg++r+ r e+++ Zmw_sc03572.1.g00090.1.am.mk 1112 RPAVFTIGIVNGLC-GSSFLTRFRETLVHYSAI----------GSEQRLVLESDMLGSFALNIIACEGQDRTDRFESYK 1179 **********9988.779*************97..........479********************************* PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +W++r+++a ++++pl+ ++ + ++++ + + + ++e++ +l++gWk+r L++ S W Zmw_sc03572.1.g00090.1.am.mk 1180 QWHMRMQRAELRQLPLDRDIIGAVTDMVKQQYHKDFVIHEDRRWLLQGWKGRILFAHSTW 1239 *****************************999888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.728 | 205 | 585 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-81 | 233 | 594 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 50.364 | 854 | 1220 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-85 | 881 | 1239 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1247 aa Download sequence Send to blast |
MATTPEEFFV EGLVKPAPSS PSVFLDLPPT PDGNTDDPPS PGNILHLLWE DGIDDDLLYQ 60 CSDHHALLQA QQPFAQILSS PSSFVTNNDN RRGDTDTQGS KDPLQGGSGD LSSPFFKGAD 120 VVEAFLKGME EATRFLPGEY SIRSKAIKKR YSRDDYLEEE EEVRRTSKAT MMKIAEPEEV 180 DIVSEMMLRG DEACIEEMEK LRIAMDIEEG RKNKTRGKGV SKAAGDVVTD LPTLLLHCAE 240 AVAANNRTVA GELLKQIKHN ASATGDARQR LAQCFSKGLE ARLLGTGNQL WSLVAAERPS 300 VVELAKAYRL SMAACCFSKV AFIFSIKTIM DAAVGKSRVH VVDYGMNYGF HWAELICLMA 360 KDRDGARAEL KITAIGCSRR MFWSAQGIEE QGRRLRKCAS EFGLPFKFHS ITTTNWENVR 420 IQDLNADIGE VLIVNDMYNF MTLMDESMLF DEPSPRDIVL SNIRNMRPDV FIQSIVNSSN 480 GGSFLSRFRE ALFYYTALFD VFDATMPRQS ESRLVLEQEL LGNHLLNVVA CEGRDLMGRP 540 EKYRQCQARN QRAGLKQLPL KPGIVKGIKE FVKTHHKDFM LGEDGQWLLQ GWMASNGRLI 600 FEWILNRWAK EKLLNARNQV AAVTSSSTMA SAPKDQMGLD EPLPPSTSSI LLLPTFPMEQ 660 QQEQEHTPLE YISRMLMEEE EEEEDRVLLQ YHDDHPVLIQ AQQSLAQVNS SSSTSDNNAS 720 TTNPSFSKAL LNDERNSNLL FSSDGTILSR SAPSVVCSTD IENATARAAA AEHDWRHAAT 780 MSFLMGMAEA SKFLPRHSNL VFKTINTHDT GAEVSRASKL MAMTETEEAF LLQTTIDKMM 840 LNDCKLSRGE MEDLRAAMNN EAVARRQERR QRKRLLQVDL HALLLRCAET VMDDGHRGAR 900 ELLEKIKRHA SPTGDATQRL AHYFAEALET RLTGMGAHRS SFTIQQPVRF LKAYPLYIAT 960 CCFNKVAFMF CNRSIYQAAA GRSRLHIVDY GVCHGFQWPV LLRWLAAREG GPPQVTITGI 1020 VLTKHWYRPS DHIEETGHRL SNCARELGVP FKFQAIMAAK WDAVRLEDLN VDPDAALAVN 1080 SLFSLEMMDD DSVVVDRASP RDVVLGNIRR MRPAVFTIGI VNGLCGSSFL TRFRETLVHY 1140 SAIGSEQRLV LESDMLGSFA LNIIACEGQD RTDRFESYKQ WHMRMQRAEL RQLPLDRDII 1200 GAVTDMVKQQ YHKDFVIHED RRWLLQGWKG RILFAHSTWV ADDAYSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-34 | 237 | 1240 | 25 | 379 | Protein SCARECROW |
5b3h_A | 6e-34 | 237 | 1240 | 24 | 378 | Protein SCARECROW |
5b3h_D | 6e-34 | 237 | 1240 | 24 | 378 | Protein SCARECROW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791279.1 | 0.0 | scarecrow-like protein 33 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |