PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03567.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 364aa MW: 38936.8 Da PI: 8.9316

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03567.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.6	1.1e-29	55	158	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a+pe+ r+ +++sl+yeA+ r+ +P+yG+ Zmw_sc03567.1.g00090.1.am.mk 55 SCNGCRVLRKGCSDSCSIRPCLqwiktPDAQSNATVFLAKFYGRAGLLNLVNAAPENLRPSVFRSLLYEACGRIVNPIYGS 135 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 vg++++ ++ ++q+++e++l ++ Zmw_sc03567.1.g00090.1.am.mk 136 VGLLWSCNWSMCQAAVEAVLKGA 158 ***************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.7	54	160	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-24	55	153	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MRELKKRRVV EKIMERGRRT SPAKALRRGH LPAASGAAAQ IVYKSTRTTQ EMRLSCNGCR 60 VLRKGCSDSC SIRPCLQWIK TPDAQSNATV FLAKFYGRAG LLNLVNAAPE NLRPSVFRSL 120 LYEACGRIVN PIYGSVGLLW SCNWSMCQAA VEAVLKGAPI VQISSADAAA ADTTSSPAHV 180 SSLHKAAYDI RHVASSSSSK KQPLCASPPQ TKAPDADKPV RLNLKKRTSD SSSAAATCSN 240 KKRKQQQQPA SLQHQQDSAV SDDHQHDSAV SDQQKHGHMA VESSNSDDDA QAAGSHVSQA 300 EHNEKEVEEE QQQNQLGLDL TLGLAPVPAP CVPHLPAPTA GDAGCSLAGT GTGWSASEPA 360 FRFL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MRELKKRRVV EKIMERGRRT SPAKALRRGH LPAASGAAAQ IVYKSTRTTQ EMRLSCNGCR  60
VLRKGCSDSC SIRPCLQWIK TPDAQSNATV FLAKFYGRAG LLNLVNAAPE NLRPSVFRSL  120
LYEACGRIVN PIYGSVGLLW SCNWSMCQAA VEAVLKGAPI VQISSADAAA ADTTSSPAHV  180
SSLHKAAYDI RHVASSSSSK KQPLCASPPQ TKAPDADKPV RLNLKKRTSD SSSAAATCSN  240
KKRKQQQQPA SLQHQQDSAV SDDHQHDSAV SDQQKHGHMA VESSNSDDDA QAAGSHVSQA  300
EHNEKEVEEE QQQNQLGLDL TLGLAPVPAP CVPHLPAPTA GDAGCSLAGT GTGWSASEPA  360
FRFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	243	KKRTSDSSSAAATCSNKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	9e-82	LOB domain-containing protein 42-like
TrEMBL	A0A0A9PIQ8	6e-89	A0A0A9PIQ8_ARUDO; Uncharacterized protein
STRING	MLOC_58304.1	1e-84	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127